PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0540
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 193aa    MW: 21481.8 Da    PI: 4.9108
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0540genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19100150356
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  ykGVr+++ +g ++AeIrdp+ ng  +r++lg++ t+e+Aa a+++a+ +++g+
  Gh_A08G0540 100 YKGVRRRP-WGTYAAEIRDPKRNG--ARIWLGTYETPEGAALAYDRAAFNMRGA 150
                  9*******.**********98776..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.180.104.5E-460113IPR029068Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
PROSITE profilePS5103222.97299157IPR001471AP2/ERF domain
CDDcd000185.77E-2999159No hitNo description
SMARTSM003807.5E-3499163IPR001471AP2/ERF domain
PfamPF008473.3E-1399149IPR001471AP2/ERF domain
PRINTSPR003676.2E-12100111IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-21100158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-30114158IPR001471AP2/ERF domain
PRINTSPR003676.2E-12139159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MYCDSASDFD LSLLDSIRQY LLEDDCDTIP GQVVENLPKT ELHEDAINVD QWINFDQLFD  60
AAEETVAVNN ASFPSFEVNF QVESTAAVPK SHAPPKEVNY KGVRRRPWGT YAAEIRDPKR  120
NGARIWLGTY ETPEGAALAY DRAAFNMRGA KAKLNFPHLI GSNQVEPVRV RSNKRRSPEP  180
SSSCSSAQSP SST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2896164270ATERF1
3gcc_A6e-2896164270ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5864365e-56JX586436.1 Gossypium hirsutum clone NBRI_GE20263 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016743208.11e-143PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A1U8NYR81e-142A0A1U8NYR8_GOSHI; ethylene-responsive transcription factor 1-like
STRINGGorai.004G070800.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.16e-43ethylene-responsive element binding factor 13