PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0537
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 229aa    MW: 25655.6 Da    PI: 6.5475
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0537genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-18101151356
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g ++AeIrdp+ ng  +r++lg++ t+e+Aa a+++a+ +++g+
  Gh_A08G0537 101 YRGVRRRP-WGTYAAEIRDPKRNG--ARIWLGTYETPEGAAVAYDRAAFNMRGA 151
                  9*******.**********98776..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-12100150IPR001471AP2/ERF domain
CDDcd000181.60E-29100160No hitNo description
PROSITE profilePS5103223.169100158IPR001471AP2/ERF domain
SMARTSM003806.3E-34100164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-31100159IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-21101159IPR016177DNA-binding domain
PRINTSPR003672.5E-12101112IPR001471AP2/ERF domain
PRINTSPR003672.5E-12140160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MYCDSASNFN LSLLDSIRQY LLEDDFDTIP GQVVENLPKR ELHDDAINVD QWINFDQLSD  60
AAEEKVTVNN VSFPSLEVTS EMETTAAVPT KPQAPPKKVN YRGVRRRPWG TYAAEIRDPK  120
RNGARIWLGT YETPEGAAVA YDRAAFNMRG AKAKLNFPHL IGSNQVEPVR VSSNKRRSPE  180
TSSSCSSAQS PSSPSSTLTS DDVTPKSKRR SVMNRFSKTE FEVDMYQLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2897165270ATERF1
3gcc_A8e-2897165270ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5864363e-70JX586436.1 Gossypium hirsutum clone NBRI_GE20263 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016743223.11e-171PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLA0A1U8NYT41e-170A0A1U8NYT4_GOSHI; ethylene-responsive transcription factor 13-like
STRINGGorai.004G070500.11e-145(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.16e-42ethylene-responsive element binding factor 13