PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0526
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 159aa    MW: 18081.9 Da    PI: 9.9015
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0526genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.53.5e-10138158121
                  ---SS-EEEEEEE--TT-SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                  ldDgy+WrKYGqK+vk+s +p
  Gh_A08G0526 138 LDDGYKWRKYGQKVVKNSLHP 158
                  59****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.6E-12123158IPR003657WRKY domain
SuperFamilySSF1182904.84E-9130158IPR003657WRKY domain
PROSITE profilePS5081112.541133159IPR003657WRKY domain
PfamPF031062.0E-6139158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MEGERGVSNY EIKVSFSTTQ AIREMGFVQY EENQMMSFMA PAQSSHHQTS QALNHATIGN  60
SSTTNSTTVA FGHNNQVGRT LDPKAVEGEN YSSNINDGNN NSWWRRSTSE KGKVNNKVRR  120
KLREPRFCFQ TRSDVDVLDD GYKWRKYGQK VVKNSLHPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116122KVRRKLR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5838299e-82JX583829.1 Gossypium hirsutum clone NBRI_GE16973 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016672978.11e-116PREDICTED: probable WRKY transcription factor 12
RefseqXP_016745113.11e-116PREDICTED: probable WRKY transcription factor 12
SwissprotQ93WY41e-35WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBLA0A1U8I9P01e-115A0A1U8I9P0_GOSHI; probable WRKY transcription factor 12
STRINGGorai.004G069500.14e-88(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.13e-32WRKY family protein
Publications ? help Back to Top
  1. Yu Y, et al.
    MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering.
    Plant Sci., 2013. 212: p. 1-9
    [PMID:24094048]
  2. Yang L, et al.
    PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa.
    Sci Rep, 2016. 6: p. 18643
    [PMID:26819184]
  3. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  4. Han Y, et al.
    WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis.
    Plant Mol. Biol., 2019. 99(1-2): p. 149-159
    [PMID:30617455]