PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0240
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 710aa    MW: 77144.5 Da    PI: 6.7788
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0240genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07293313526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++ G C++Gd C +aHg
  Gh_A08G0240 293 PCPDFRK-GACRRGDMCEYAHG 313
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002041.41E-1519148No hitNo description
Gene3DG3DSA:1.25.40.201.3E-1820170IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.04E-1620169IPR020683Ankyrin repeat-containing domain
SMARTSM0024840002252IPR002110Ankyrin repeat
PfamPF127965.0E-1066137IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.91669171IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00266998IPR002110Ankyrin repeat
PROSITE profilePS500889.00369101IPR002110Ankyrin repeat
PRINTSPR014153.2E-57085IPR002110Ankyrin repeat
SMARTSM002480.0052103135IPR002110Ankyrin repeat
PROSITE profilePS5008812.235103138IPR002110Ankyrin repeat
PRINTSPR014153.2E-5122136IPR002110Ankyrin repeat
SMARTSM003564.0E-6288314IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582293315IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5293313IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4321351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MCVGPEHSKS GDMNHLTVKT EDSFSSLLEL ASNNDVEGIK QSIEKDVSSI DEVGLWYCRE  60
KGSNLIVAKH RTPLMVAATY GSVDVVKLIL THSEAVNLSC GTDKSTALHC AASGGSLHAI  120
DVVNLLLSAG ADTNSSDANG CRPADVVVVH PKLQSMRAVM EELLSGHVSD DSFGKQNLRI  180
SIDNPTSGLP PLSSSPENRS SPSPSHLASS PTASKFVDIP VNSTTERKEY PVDPSLPDIK  240
NSVYAADEFR MFSFKIRPCS RAYSHDWTEC PFVHPGENAR RRDPCKYHYS CVPCPDFRKG  300
ACRRGDMCEY AHGVFECWLH PAQYRTRMCK DGTSCDRRVC FFAHTAEELR PLYVSTGSAV  360
PSPRSYASTA SVMDMAAVMS LLPGSPSSVS ALSPSPFNQP MSPSANGLSH SSAAWPQPNV  420
PTLHLPGSSF QSSRLRSSLS ARDIPREGFD MWPDFDAHEQ ILNDLTCVSK CHNSPVSVSR  480
SCRSKTLTPS NLEELFSAEI SSSPRYTDQS AASAIFSPTH KSAVLNQFQQ QQSKLSPINT  540
SVFAPRNVEH PLLQASFGVG SPGRMSPRSN EPISPMAARL SAHVQLEKQR QQQLSCLSSR  600
ELGSPVNSPW SKWGSPNGKL NWSVSADELG QLRKSSYELL NSSEGPDLSW VQSLVKESPP  660
EMMKEKLVAP APHGASSGNI SNDSNSQINS VDHSVLGAWI EQMQLDQLVV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.134260.0ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016712598.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_016712599.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1U8LGS80.0A0A1U8LGS8_GOSHI; zinc finger CCCH domain-containing protein 30-like
STRINGGorai.004G037500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]