PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G2317

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 169aa MW: 19766.2 Da PI: 4.843

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G2317	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	8.9e-31	112	169	1	58
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDgy+WrKYG+K+vk+s++pr+YY+C +gCpvkk+ver++edp++v++tYeg Hnh Gh_A07G2317 112 LDDGYRWRKYGKKMVKNSPNPRNYYKCLIEGCPVKKRVERDREDPSYVITTYEGIHNH 169 59*******************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.7E-33	99	169	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-27	105	169	IPR003657	WRKY domain
PROSITE profile	PS50811	30.71	107	169	IPR003657	WRKY domain
SMART	SM00774	2.2E-31	112	169	IPR003657	WRKY domain
Pfam	PF03106	1.6E-24	113	169	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MHILLFSFII EMFNNKFGLP NSPESDCADR TKFELPDAYF DGWLHEGYRE AMISGTIENP 60 FNQANEVFDE FACNGSLLIP APDDNRESET VGEMSELRER YAFKTKSEVE ILDDGYRWRK 120 YGKKMVKNSP NPRNYYKCLI EGCPVKKRVE RDREDPSYVI TTYEGIHNH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-27	102	169	7	74	Probable WRKY transcription factor 4
2lex_A	9e-27	102	169	7	74	Probable WRKY transcription factor 4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.132	0.0	boll

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669805	0.0	KF669805.1 Gossypium hirsutum WRKY transcription factor 114 (WRKY114) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016717004.1	1e-125	PREDICTED: probable WRKY transcription factor 50 isoform X1
TrEMBL	A0A1U8LUU2	1e-124	A0A1U8LUU2_GOSHI; probable WRKY transcription factor 50 isoform X1
STRING	Gorai.001G021500.1	1e-118	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6121	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	9e-43	WRKY DNA-binding protein 50