PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1318
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 319aa    MW: 35320.2 Da    PI: 8.7121
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1318genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.4e-091443130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +g+W +eEde+l+++++++G g+W++ ++ 
      Gh_A07G1318 14 KGPWGPEEDEILINYINKHGHGSWRSLPKL 43
                     79***********************99876 PP
2Myb_DNA-binding48.81.6e-1591136148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++l +++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
      Gh_A07G1318  91 RGPFTLDEEKLVIQLHAILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 136
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-23588IPR009057Homeodomain-like
PROSITE profilePS5129410.401985IPR017930Myb domain
SuperFamilySSF466895.81E-8944IPR009057Homeodomain-like
SMARTSM007171.1E-91387IPR001005SANT/Myb domain
PfamPF002491.4E-71443IPR001005SANT/Myb domain
CDDcd001671.54E-71685No hitNo description
SuperFamilySSF466891.0E-2171142IPR009057Homeodomain-like
PROSITE profilePS5129424.50686140IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-2589140IPR009057Homeodomain-like
SMARTSM007172.0E-1490138IPR001005SANT/Myb domain
PfamPF002491.7E-1491136IPR001005SANT/Myb domain
CDDcd001672.64E-1193136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRTPCCERK GLKKGPWGPE EDEILINYIN KHGHGSWRSL PKLAALRKFL FCRVSPLQPI  60
KGLISTLTGL RRCGKSCRLR WTNYLRPDIK RGPFTLDEEK LVIQLHAILG NRWAAIASQL  120
PGRTDNEIKN LWNTHLKKRL LCMGVDPLTH EPVTSGGPTS RPRSSPATRH MAQWESARLE  180
AEARLSKGSL FFNSPPTSVK PDPDFFLRLW NSEVGESFRK LNGEAKTDCR SPISQASSST  240
KCGSVSGVTV DVGPIAAGSS TPKSSRTEDP IMFDASFSSC SNESEDSSDT ALQLLLDFPI  300
NNDMSFLEDV DTYATPLQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24121405108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591694e-70AJ459169.1 Gossypium hirsutum partial myb139 gene, clone pGhMYB139.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643240.10.0PREDICTED: myb-related protein 308-like
SwissprotQ9M2D91e-116MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A0D2NAE80.0A0A0D2NAE8_GOSRA; Uncharacterized protein
STRINGGorai.001G169700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69822643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-110myb domain protein 17