PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1274
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 335aa    MW: 38181.6 Da    PI: 5.1639
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1274genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.85.2e-29112173159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK++ gs+fpr+YYrCt++   gC + k+++rs+edp+++e++Y+g+H+++
  Gh_A07G1274 112 LDDGYCWRKYGQKDILGSNFPRGYYRCTHRfsqGCLAGKQIQRSDEDPTIFEVKYRGRHTCN 173
                  59***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-28102174IPR003657WRKY domain
PROSITE profilePS5081123.124107170IPR003657WRKY domain
SuperFamilySSF1182902.88E-25110174IPR003657WRKY domain
SMARTSM007748.7E-39112174IPR003657WRKY domain
PfamPF031062.2E-24113172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEKTMDWEQS TLLNELTQGR DFTNMLRKHL HPSSSPETRQ VLLDKILCSY DKALSLLNCS  60
GYMVETKPRV STLGSPESDA SDKKDMFKKR KTSSGWSEQI RVCSATSLEG PLDDGYCWRK  120
YGQKDILGSN FPRGYYRCTH RFSQGCLAGK QIQRSDEDPT IFEVKYRGRH TCNQVSHLVA  180
TPKEKGNHYR EKQQVEEKQK QSEELLLSFE TGLKVNTEDL DNRENIFPSF SFPIESEEVQ  240
NGLLRNSLMK NISPAFVSPA TSESNYFSVS AFHMGSFDFS QNVQTSESEL TEIISAPASV  300
TNSPIVDLDI SSLEKLEFDQ SFPFDNPEFF TNFLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-20112172868OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.87270.0boll| leaf| ovule| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8258760.0KJ825876.1 Gossypium hirsutum WRKY protein 34 (WRKY34) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016738601.10.0PREDICTED: probable WRKY transcription factor 46
TrEMBLA0A1U8NHW50.0A0A1U8NHW5_GOSHI; probable WRKY transcription factor 46
STRINGGorai.001G155800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48882352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-57WRKY DNA-binding protein 46