PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1232
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 502aa    MW: 56093.3 Da    PI: 5.0174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1232genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.7e-12322367454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Gh_A07G1232 322 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYISEL 367
                  799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-5426208IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.92318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17319380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-14321372No hitNo description
Gene3DG3DSA:4.10.280.101.2E-16322380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-10322367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-16324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MEELIISPSS SSSLVYMTQE TSPSTLQQRL QFVVQSQQIW WTYAIFWQTS NDEHGRLFLC  60
WGDGYFQGTT KGTPPKLLSA NISCLENERR KEMKGAQTLI GDNHEVDVSM MDGTTGVSDA  120
EWFYVMSLSR SFPAGEGIPG MALSTGSLVW LTGAHALQFY NCERAIEAQM HGIETMVCIP  180
TSCGVLELGS VEMISENWGL VQQVKSIFGA DPIDLLQKQS STDPTLTRPS IPFLDRNISF  240
ADMGIVSGVE EEEENVGPVN ETKQEHHNHP TKKYSTKLGQ SSSVDSEHSD TDRPSLAMSH  300
LEQRTPQKRG RKPGLGRETP LNHVEAERQR REKLNHRFYA LRAVVPNVSR MDKASLLSDA  360
VSYISELKAK VEELESQLQR ECKKPKVEMV DVTDNQSTTT SVEQEAAKPD NSPSPATAGC  420
VGLEFDIKIM GNDAMIRVQS ENMNYPVTRL MVALRDLEFP IHHASMSCVN ETMLQDIVVN  480
VPDLELRNEQ GLKSTLLRRL DH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-33252088192Transcription factor MYC3
4rqw_B1e-33252088192Transcription factor MYC3
4rs9_A1e-33252088192Transcription factor MYC3
4yz6_A1e-33252088192Transcription factor MYC3
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6158010.0JX615801.1 Gossypium hirsutum clone NBRI_GE60007 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747626.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1U8P8U80.0A0A1U8P8U8_GOSHI; transcription factor MYC2-like
STRINGGorai.001G151700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-68bHLH family protein