PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1162
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 403aa    MW: 44977.1 Da    PI: 4.9866
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1162genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.6e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEd ll ++++  G g+W++ ++  g+ R++k+c++rw +yl
      Gh_A07G1162 14 KGRWTAEEDVLLTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding54.33.2e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E+e ++++++ lG++ W++Ia++++ gRt++++k++w+++l
      Gh_A07G1162  67 RGNFTSQEEEVIINLHATLGNR-WSLIASYLP-GRTDNEIKNYWNSHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-20564IPR009057Homeodomain-like
PROSITE profilePS5129415.106961IPR017930Myb domain
SuperFamilySSF466892.37E-2811108IPR009057Homeodomain-like
SMARTSM007173.1E-111363IPR001005SANT/Myb domain
PfamPF002492.0E-131461IPR001005SANT/Myb domain
CDDcd001674.37E-81661No hitNo description
PROSITE profilePS5129425.17362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2565116IPR009057Homeodomain-like
SMARTSM007174.3E-1666114IPR001005SANT/Myb domain
PfamPF002492.8E-1567112IPR001005SANT/Myb domain
CDDcd001676.99E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDVLLTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNF TSQEEEVIIN LHATLGNRWS LIASYLPGRT DNEIKNYWNS HLSRKIHSFR  120
RPLTQSMPVI MDLTKTAVIA KRKGGRNSKG SMKEIKSRST AKDTGSCSNK PAENVCVNEV  180
VPFPSTPLLE KETLSTTAIE DRMVLDQHGE DKERTTHVVP SPCQDTVVEG MLGSSEERES  240
LVSEEGTIEN SMQCPSGNAE KGTGILAPHE SIDSSETEWF NDILDSELLQ PSGDLTFTEL  300
GEDSGNVKTH TTAANNEETV SRNCSADSGG DLSSCTSTTF YFVDDWEWEN VVPRSELWDE  360
KEYMCSWLWE PSDYHGKGER HKVDDNGFEG HNPMIAANAL LFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO29213350.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0341320.0AF034132.1 Gossypium hirsutum MYB-like DNA-binding domain protein (MYB4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016743760.10.0PREDICTED: transcription factor MYB75-like
TrEMBLA0A2P5YCY00.0A0A2P5YCY0_GOSBA; Uncharacterized protein
STRINGGorai.001G143200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17349511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.13e-74myb domain protein 12