PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1124
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 681aa    MW: 74770.9 Da    PI: 6.7088
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1124genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.47.9e-06275296426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  ++C++f++ G Ck Gd C +aHg
  Gh_A07G1124 275 APCPDFRK-GSCKQGDLCEYAHG 296
                  59******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127964.7E-1165145IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.1E-1471154IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.7367698IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.202.9E-1576156IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.73576146IPR020683Ankyrin repeat-containing domain
SMARTSM002488.1E-476106IPR002110Ankyrin repeat
CDDcd002045.67E-1478151No hitNo description
PROSITE profilePS500889.564111146IPR002110Ankyrin repeat
SMARTSM002480.0047111143IPR002110Ankyrin repeat
SMARTSM003567.8E-5271297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4275297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.446276298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4303334IPR000571Zinc finger, CCCH-type
SMARTSM0035626306329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MCGNLDTPSS SEETKTMECL TGAVGNNCSF SVLLEFAADN DVEGFQRYMI ASDVSLVGEV  60
GLWYGCRKSS KQMVVEQRTP LMIAARYGSV DVVKLILSLS EVDVNLSCGP DKRTALHCAA  120
SGGSIGAVEV VKLLLLAAAD PCVTDAYGCR PSNVIVAPWN MPQIKVALEE LLNNHDPVCL  180
EKLHDSGSSD VKITAVTCKT TDNIVSSAQE KEYPVDPSFP DINSSIYSTD EFRMFSFKIR  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKF HYSCAPCPDF RKGSCKQGDL CEYAHGVFES  300
WLHPAQYRTR ICKDGTTCQR RVCFFAHRPE ELRPLYLSSG LGIQSPQSAA SSVITMDKIG  360
ILNLLPGSPS ALTAISVSPF SPAMSPSANV ISQAPTGWPQ HVPTLHLSGS NLQGSRLRSS  420
LNAKDMSAME LNMSRDFEVH QRRYLSNLSC FSQPHLGRKS SNLDGLFSTE VSSTRCPNQV  480
TAMPILSPVL SAKLEQQQRV LSPIETNIFS PKNDHPLLQS AFDASLSERI STWNVEPLSP  540
LNSLLSASTN LEKQQQSLHN LSTQELGYKL SNDLESKGVT GSLLNSWPKR ETPNCKVDWP  600
IQEDEFSQFH KSCSILHHGM EPAVSLVQSM VKESPSVPTT LATSSRTLPV EGSNSNFRGK  660
LGDHEIFLAL CKQLQLDKIM A
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6151594e-78JX615159.1 Gossypium hirsutum clone NBRI_GE59007 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016743789.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like isoform X1
RefseqXP_016743790.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like isoform X1
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A1U8NY320.0A0A1U8NY32_GOSHI; zinc finger CCCH domain-containing protein 56-like isoform X1
STRINGGorai.001G138300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2236145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain