PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1033
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 693aa    MW: 76063 Da    PI: 7.0469
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1033genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-094194561954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Gh_A07G1033 419 FEHflHPYPKDSDKHMLAKQTGLTRNQVSNWFINARVR 456
                  554459******************************88 PP
2BELL109.42.2e-35281352172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +rqelq+kkakL+s+l+eV++rY+qy++q+q+v+ss e +ag g+ak+Yt +A+++iS++FrcLkd i+eqi
  Gh_A07G1033 281 QRQELQMKKAKLVSMLDEVEQRYRQYRQQMQIVVSSLEKAAGFGAAKSYTGIASRTISKQFRCLKDSISEQI 352
                  69*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.2E-54214350IPR006563POX domain
PfamPF075264.1E-45219349IPR006563POX domain
PROSITE profilePS5007112.05397460IPR001356Homeobox domain
SMARTSM003893.2E-9400464IPR001356Homeobox domain
CDDcd000863.22E-12400461No hitNo description
SuperFamilySSF466899.41E-17402467IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-29403466IPR009057Homeodomain-like
PfamPF059204.1E-18417456IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MATYSHGSSE FQAASVAAPD GMQTLYLMNP NYIPYSDTNQ PVAATNLLFL NPAGNALNPS  60
SFPHTPPPNY HHLLGLPLPT PTASIVPANS NETHRPSSLH GIVSGVHYNS WGSSSTIDHQ  120
TSSASTYPQI VSTAVDNSAA RPHDVASQLR PVVVSPRQGL SLSLSSQQVP YSSSNVEADH  180
IQGQVPTMSP AAADEMRISG NSPSSASVVS NGILGVQSVV LGSKYLRAAQ ELLDEVVNVG  240
KVIKPEVSEG TKEKIKADKE PVGSSAGEDG AQRGPELTTA QRQELQMKKA KLVSMLDEVE  300
QRYRQYRQQM QIVVSSLEKA AGFGAAKSYT GIASRTISKQ FRCLKDSISE QIKATSKSLG  360
EDDCLGVKLE GSRLRYVDYQ LRQQRALQQL GMIQHNNNVW RPQRGLPERA VSVLRAWLFE  420
HFLHPYPKDS DKHMLAKQTG LTRNQVSNWF INARVRLWKP MIEEMYLEEM KEHEMKGGEE  480
NTNKSEQKES GSTSSKSNAQ QQEMNASPTH QFSNSTISTS PMEGSLMPPQ TSFNLIGSSE  540
FDNGVGLAQR ASKKSRNAND ELQNSPMEMK PGETWETNIN MIKLGDEERL LKHSFSYLSG  600
TAYSSMGEIG RFNEEQQLPP KFHGNSVSLT LGLPHCENLS LSGNPQNFLS NHNIQLGINT  660
PHASHSNAAG FDNIHEMQNR QRFAAQLLPD FVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16406464563Homeobox protein Meis2
3k2a_B2e-16406464563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.13620.0boll| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5260251e-151HQ526025.1 Gossypium herbaceum clone NBRI_C_6055 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016743830.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_016743831.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLA0A1U8NXZ30.0A0A1U8NXZ3_GOSHI; BEL1-like homeodomain protein 1
STRINGGorai.001G125400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16274513
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.38e-98BEL1-like homeodomain 1