PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G0936

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 383aa MW: 42644.9 Da PI: 9.0579

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G0936	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	143	166	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg++F ++ L++H+ t H Gh_A07G0936 143 FPCTACGEVFQKPHFLEQHQATkH 166 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.827	143	171	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	145	166	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	6.33E-14	168	382	No hit	No description
Gene3D	G3DSA:3.90.228.10	5.6E-6	316	382	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MAKTNFGSFF NKFLSLFIRL LHLGCFIFTA KDHQKPPKKR KHWPLSPSSP SHKPHANKSL 60 SSTWSYLKRI FTSSKANCKN TIPTHPTAAP TPALTSARNS QQSLVSMVIL PETHLSETSL 120 PPPHPESDIS SDNPFSPLRN DIFPCTACGE VFQKPHFLEQ HQATKHAVSQ LLDGDSGKNI 180 VRIIFKTGWT DKVRNPEIHR ILKIHNSTKI LARFEEYREL VKAKAARNGA VVGRRDERCI 240 ADGNELLRFY CSTFMCDLGL NGSSGICSQQ YCSVCGIIKS GFSPKMDGIS TLSTSWRAHM 300 AVPEDVEEEF KFMNVKRAML VCRVVAGRVG SEGDETNKED GGFDSVIGRG GGNMVHHTKV 360 DEEELLVFNP RAVLPCFVIV YTV

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MAKTNFGSFF NKFLSLFIRL LHLGCFIFTA KDHQKPPKKR KHWPLSPSSP SHKPHANKSL  60
SSTWSYLKRI FTSSKANCKN TIPTHPTAAP TPALTSARNS QQSLVSMVIL PETHLSETSL  120
PPPHPESDIS SDNPFSPLRN DIFPCTACGE VFQKPHFLEQ HQATKHAVSQ LLDGDSGKNI  180
VRIIFKTGWT DKVRNPEIHR ILKIHNSTKI LARFEEYREL VKAKAARNGA VVGRRDERCI  240
ADGNELLRFY CSTFMCDLGL NGSSGICSQQ YCSVCGIIKS GFSPKMDGIS TLSTSWRAHM  300
AVPEDVEEEF KFMNVKRAML VCRVVAGRVG SEGDETNKED GGFDSVIGRG GGNMVHHTKV  360
DEEELLVFNP RAVLPCFVIV YTV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	40	KPPKKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016751740.1	0.0	PREDICTED: uncharacterized protein LOC107960046
TrEMBL	A0A1U8PKM1	0.0	A0A1U8PKM1_GOSHI; uncharacterized protein LOC107960046
STRING	Gorai.001G115200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7919	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-113	C2H2 family protein