PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G0870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 184aa MW: 21056.2 Da PI: 4.7983 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.6e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T+ E+ l +++++++G++ W++I+r+++ gRt++++k++w++++ Gh_A07G0870 2 TPHEERLVLELHAKWGNR-WSRISRKLP-GRTDNEIKNYWRTHM 43 9*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 8.42E-12 | 1 | 43 | No hit | No description |
PROSITE profile | PS51294 | 23.198 | 1 | 47 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-11 | 1 | 45 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-19 | 2 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.51E-12 | 2 | 47 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MTPHEERLVL ELHAKWGNRW SRISRKLPGR TDNEIKNYWR THMRKTAQEK KRAIPISPSS 60 SSSNCHSSSS TVTAVDSLPS SGTGNIVSFY DTGGLDMAGK KNSPEFEDGN GYSMDDIWKD 120 IDMSEENTVI KPLSDNYSQQ DCNFSWEYCW DTLWKMDDEE ESKMFFPPNQ LVSCFDFGRE 180 SVTG |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016730953.1 | 1e-135 | PREDICTED: transcription factor MYB59-like | ||||
Swissprot | Q9LX82 | 2e-46 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A1U8MZG1 | 1e-134 | A0A1U8MZG1_GOSHI; transcription factor MYB59-like | ||||
STRING | Gorai.001G107900.1 | 1e-117 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2502 | 27 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.2 | 4e-48 | myb domain protein 48 |
Publications ? help Back to Top | |||
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