PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0845
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 426aa    MW: 47201.6 Da    PI: 10.2128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0845genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-11107148351
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                   +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Gh_A07G0845 107 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 148
                  79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.7E-4106165IPR001471AP2/ERF domain
PfamPF008471.4E-5106149IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-7107151IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-6113157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MVSLRRRKLL GLCSGKSSFL SPLSRFFCNG NPPESLSQNA KSISVHPMPS DSVNHIHGKS  60
IVKVDSGSPN VSGSSKEPHY QPFSGQTIKR RKRHRRKHVQ NQEPCLMRGV YFKNMKWQAA  120
IKVDKKQIHL GTVGSQEEAA RLYDRAAFMC GREPNFELPE EEKQELSRFK WDEFLAYTRR  180
SITNKKYKQR LGVEPQKRSE PVIENSDLDS KRGADSSSAS EECVSSSLNP EKGFRTETMG  240
SPNQQGDSPS PSSSTSVDWR RRILIPTILA GVSGGGVGLV SKHRKVYGLA NISATYATNF  300
AIVTGCYCGA REFVTATRKT GPDDLLNSAI AGFGTGAILG RLQGGQFGAY RYSLVFAVVG  360
TAVDFAALKL RPKLHAFSES MFDKSSSLKL PEWSPIQVLD EEALAAKRAR EEKLYEQRKA  420
LNKEES
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.125550.0boll| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016720518.11e-163PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_016720519.11e-163PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0B0NGA80.0A0A0B0NGA8_GOSAR; Uncharacterized protein
STRINGGorai.001G105100.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.13e-47ERF family protein