PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G0599 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 30176.8 Da PI: 7.0834 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.3e-18 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd ll+++++++G g+W++ a++ g++Rt+k+c++rw++yl Gh_A07G0599 17 RGTWSAEEDSLLIHYIARHGEGHWNLLAKRAGLRRTGKSCRLRWLNYL 64 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.9e-15 | 71 | 113 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+ T++E+ l+++++ ++G++ W++Ia++++ gRt++++k++w++ Gh_A07G0599 71 GNLTPQEECLILQLHSKWGNR-WSKIAKYLP-GRTDNEIKNYWRT 113 678******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.023 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.39E-30 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-17 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-23 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.69E-12 | 19 | 64 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 32 | 41 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 24.784 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 71 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-23 | 72 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.94E-12 | 74 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MLSYTNSSKG DAEQLRRGTW SAEEDSLLIH YIARHGEGHW NLLAKRAGLR RTGKSCRLRW 60 LNYLKPDVKH GNLTPQEECL ILQLHSKWGN RWSKIAKYLP GRTDNEIKNY WRTRVHKQAR 120 HLKIDANSTP FQHVIRCCNW MPRLLPKMES LNQTSQHDQE LMTMEQVPVQ EQISGSTDIM 180 STISQVADSQ TSPFSIISSN DDYTLAKYCY HDDNIDKNGC YYNLASTSAF EDLPYLDGDG 240 HKQDYTCVND GFADGLWSMG EL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 15 | 119 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017638697.1 | 0.0 | PREDICTED: transcription factor MYB24-like | ||||
Swissprot | Q9C9G7 | 5e-69 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A2P5WGZ7 | 0.0 | A0A2P5WGZ7_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G075000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22360 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 2e-71 | myb domain protein 62 |
Publications ? help Back to Top | |||
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