PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G0585 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 312aa MW: 35602.5 Da PI: 4.6647 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1e-19 | 96 | 149 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++++LAk+lgL+ rqV +WFqNrRa++k Gh_A07G0585 96 KKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARWK 149 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.7 | 5.1e-41 | 95 | 185 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ +qv++LE+sFe e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlEkdy++L++++++lk++ +L ke+++L++e+ Gh_A07G0585 95 EKKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYDTLQASFNTLKADYGNLLKEKDKLKQEV 185 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.41E-20 | 84 | 153 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.702 | 91 | 151 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-19 | 94 | 155 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.2E-17 | 96 | 149 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.41E-18 | 96 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-20 | 98 | 158 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.0E-6 | 122 | 131 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 126 | 149 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.0E-6 | 131 | 147 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.0E-13 | 151 | 187 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MAGGRVVSCN NTNSVGGSSN LSVLLQNQRV PSSSEPMDPL FIPRPGSSPY SFFVSGTRSM 60 VSFEDVHGGN RSFFRSFDEE ENGDEDLDEY FHQPEKKRRL TVDQVQFLEK SFEVENKLEP 120 ERKTQLAKEL GLQPRQVAIW FQNRRARWKT KQLEKDYDTL QASFNTLKAD YGNLLKEKDK 180 LKQEVLSFES LIEFKPLYGF CLILILVYQV LQLTDKLVMK EKNNSELSDV NTVCQEPPQK 240 PVDSDSPHSS YPFETDQSDT SQDEEDSLSK ALFQPSSHIF PKLEGNDYSD PPASSCSYGF 300 HAEDHAFWSS AY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 151 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.21278 | 0.0 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017643272.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HOX20-like isoform X1 | ||||
TrEMBL | A0A0D2PVF9 | 0.0 | A0A0D2PVF9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G073600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-43 | homeobox 1 |