PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0547
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 457aa    MW: 50751.7 Da    PI: 8.5378
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0547genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-165498147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a +++G g W+ I +++g ++++ q++s+ qk+
      Gh_A07G0547 54 REKWTEEEHQRFLEALRLYGRG-WRQIEEHIG-TKSAVQIRSHAQKF 98
                     789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-1548103IPR009057Homeodomain-like
PROSITE profilePS5129420.71649103IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-851100IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-1652101IPR006447Myb domain, plants
SMARTSM007173.0E-1253101IPR001005SANT/Myb domain
PfamPF002492.1E-145497IPR001005SANT/Myb domain
CDDcd001671.84E-105699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MATQDQIEDK TSPNAFKSGI CPQSKTLNQL QELYTFNHDH TPKARKPYTI TKQREKWTEE  60
EHQRFLEALR LYGRGWRQIE EHIGTKSAVQ IRSHAQKFFS KVARESNGGF DGSIKPIVIP  120
PPRPKRKPVH PYPRKSVDLV KGKSPSSQPE RSPSPNQFFR EQDNKSPTSV LSDAVGSSAL  180
EQQKGCSSPT SCTTNLQSIN TSPVEKETDY ATSNLAAEEE KPSLSSVKIF GQSDAENILS  240
MNLNTDFKDF VFGEGNAAPV IPSTSFKLFG KTVQVKDSPK PSINAENFES QASKTSRDDV  300
DAVNKMLVQA FPSTHLDTSL SLSTVIDNWN AVPSRSNLST SDAPLPWWAF YKGVPFCYIT  360
SFNQTRSDSS VGERMKEKEI LNEGSCSGSN TGSVSHVSRR VSDCVDSESQ RPCLEGKMSL  420
QRCTKGFVPY KRCLAERDMT SSVVSEGQET HRARVCS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.151190.0boll| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643923.10.0PREDICTED: protein REVEILLE 7-like
SwissprotB3H5A86e-55RVE7_ARATH; Protein REVEILLE 7
TrEMBLA0A0B0P3260.0A0A0B0P326_GOSAR; Protein LHY-like protein
STRINGGorai.001G069700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.12e-43MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]