PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A07G0414 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 294aa MW: 32455 Da PI: 10.0388 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.7 | 1.6e-11 | 130 | 177 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++e+L++l+P + +k Ka iL + ++Y++sL+ Gh_A07G0414 130 SHSLAERVRRKKISERMEKLQRLVPGC----DKITGKALILDEIINYVQSLE 177 8*************************9....899***************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.45E-17 | 124 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.53E-10 | 124 | 181 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.2E-17 | 126 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.974 | 126 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.0E-9 | 130 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-9 | 132 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 294 aa Download sequence Send to blast |
MASFSTKSNP FLIDSIFSPH KISGSVGEIE NLNFNWVYSD NNEPSGSIFK KQSSTGEFTV 60 VDDIVALTSK KRRAKNGVKD EKEGKPKNQK KGNDEKKVYK GSKKDRKKGG EEPPNGYIHV 120 RARRGQATDS HSLAERVRRK KISERMEKLQ RLVPGCDKIT GKALILDEII NYVQSLESQV 180 EFLSMKLATL NPMFYDLGVD LEAFMVKPEI VNNVSSPTQC NPTQPITTTA AAAAIGTMAT 240 FTPTNNIPLL DTSASLLFHQ GEMSAVFSQF QLPKEAQDAE SKGKGRPKIS ALKL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 69 | 74 | KKRRAK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.3417 | 0.0 | ovule |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 73859648 | 0.0 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017646875.1 | 0.0 | PREDICTED: transcription factor bHLH137 isoform X2 | ||||
TrEMBL | A0A2P5Y9F6 | 0.0 | A0A2P5Y9F6_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G054900.1 | 1e-159 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8796 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50915.2 | 5e-53 | bHLH family protein |