PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0291
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 356aa    MW: 40232.7 Da    PI: 7.6982
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0291genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-0793117126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+ C  f+  GtC+ G+ C+FaHg
  Gh_A07G0291  93 FKTRMCAKFRL-GTCRNGEGCNFAHG 117
                  69*********.*************8 PP
2zf-CCCH28.32.9e-09154176325
                  S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                  ++lC+ ++ + +C+yGdrC+F H
  Gh_A07G0291 154 MKLCKKYYNGEECPYGDRCNFLH 176
                  689******66************ PP
3zf-CCCH34.14.6e-11239265127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+lC  +  t +C++G++C+FaHg+
  Gh_A07G0291 239 WKTKLCTKWETTDHCPFGEKCHFAHGQ 265
                  8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.4E-1488125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-890123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2292119IPR000571Zinc finger, CCCH-type
SMARTSM003560.06792118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023151179IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015151178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-7151178IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-7154176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-9154177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-15236269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-10237269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202238266IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-4238265IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8239265IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MNYPESRSSF MRTPQSTYAG SDAIGIWPEF PMNDWQFDPH SEFEQQQQQQ QSPPFKRPRH  60
SEDNQSNIVQ CTPTNPRMPS NPPTNKGTTN IFFKTRMCAK FRLGTCRNGE GCNFAHGIED  120
LRQPPPNWQE LVGGREEDRP SGNWDDDQKI IHRMKLCKKY YNGEECPYGD RCNFLHEDPS  180
KFRDDMGRFR ESSAISIGTT APPAGHGTAS EQSEGNRPLN SSSSDPFRGN TKPVYPVYWK  240
TKLCTKWETT DHCPFGEKCH FAHGQAELQG MNGRVDGDYG STGSGLTRIG SVSTKIHNLP  300
ANDPPPVTSS APSLDEKAQA KKCLFKWKGP RKINRIYGDW LDDMPLVHKL PSQVES
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5277611e-129HQ527761.1 Gossypium herbaceum clone NBRI_C_EYT27PB01BXVU7 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016728251.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
RefseqXP_016728252.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT811e-103C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A1U8MN540.0A0A1U8MN54_GOSHI; zinc finger CCCH domain-containing protein 39-like
STRINGGorai.001G040700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-105C3H family protein