PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0287
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 259aa    MW: 29200.4 Da    PI: 8.8615
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0287genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.8e-1622971599
                 -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3 15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  l++p +f++++ +g+ ++  +  +  + gr+W+vk+  r ++    +++GW++F+++++L +gDf+vF++ g++ f   v vf++
  Gh_A07G0287 22 HLSIPLSFFKDYlKGQINC--ESAVLRSYGRTWSVKI--RDRR----FEDGWQDFARDHDLHVGDFLVFRYGGNMVF--DVVVFDT 97
                 599*********9555444..5667778*********..7777....9***********************999999..7777765 PP
2B3543e-17141229697
                  ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ++  ++ks rl +p+kfa++++++  +s + +l de+grsW   ++ + ++g++++++GW++ +  n L  +D v ++l+g ++ ++ +k++
  Gh_A07G0287 141 LTLESMKSFRLNIPRKFARSNDLD--RSCETVLVDEQGRSWMASIRLKDSDGQVYIGRGWRNICIGNSLGLKDCVKLELIG-NGITPIFKLY 229
                  4778999***************99..5668*************************************************99.5666777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-216100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-208105IPR015300DNA-binding pseudobarrel domain
CDDcd100173.44E-201196No hitNo description
SMARTSM010195.2E-181398IPR003340B3 DNA binding domain
PfamPF023629.4E-132294IPR003340B3 DNA binding domain
PROSITE profilePS5086312.2522398IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-18132226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-18134229IPR015300DNA-binding pseudobarrel domain
CDDcd100172.33E-17135230No hitNo description
PROSITE profilePS5086311.575136232IPR003340B3 DNA binding domain
SMARTSM010195.7E-17137232IPR003340B3 DNA binding domain
PfamPF023622.4E-15141229IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSIALFSPTI PHFFQPLLPG FHLSIPLSFF KDYLKGQINC ESAVLRSYGR TWSVKIRDRR  60
FEDGWQDFAR DHDLHVGDFL VFRYGGNMVF DVVVFDTSAC QRQYPLLATQ TQQTAKEIGK  120
QHEKRTSTSV TLESPHFVSN LTLESMKSFR LNIPRKFARS NDLDRSCETV LVDEQGRSWM  180
ASIRLKDSDG QVYIGRGWRN ICIGNSLGLK DCVKLELIGN GITPIFKLYK VASNSDAKKL  240
PNCFGSNAGC SGGSTIILE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016728248.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A1U8MRS60.0A0A1U8MRS6_GOSHI; B3 domain-containing protein REM5-like
TrEMBLA0A2P5XIR80.0A0A2P5XIR8_GOSBA; Uncharacterized protein
STRINGGorai.001G040300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-48B3 family protein