PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G2036

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

VOZ

Protein Properties

Length: 387aa MW: 43192.1 Da PI: 7.8512

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G2036	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	334.4	6e-103	171	350	37	216
VOZ 37 lalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysg 134 a+neg+pg+ pvlrp gi+lkdgllfaalsak+qgk+vgipec+gaataks wna elfdl +l+ge irewlffdkprrafesgnrkqrslpdy+g Gh_A06G2036 171 KAMNEGPPGMGPVLRPAGIGLKDGLLFAALSAKTQGKDVGIPECQGAATAKSLWNALELFDLLVLDGELIREWLFFDKPRRAFESGNRKQRSLPDYNG 268 599********************************************************************************************* PP VOZ 135 rgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlt 216 rgwhesrkqvm+efgglkrsyymdpqp+++fewhlyeyein++da+alyrlelklvd+kksakgk +d+++ k++grl+ Gh_A06G2036 269 RGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVDGKKSAKGKPVNDTVSYQHKHMGRLS 350 ******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MGKGSKNNCK SASHKLFKDK AKNRVDDLQG MFLDLQFARK ESRGIDVAVL EEQLHQMLRE 60 WKAELNEPSP ASSLQQVRTA FIGGSLGSFS SDICRLLQLC EEEDDATSIL VVPKPEPNDQ 120 SLQVGDIAAS QERYAVNQGQ HECGFPLVDQ CKESPSQVQS VHFGIVQDLL KAMNEGPPGM 180 GPVLRPAGIG LKDGLLFAAL SAKTQGKDVG IPECQGAATA KSLWNALELF DLLVLDGELI 240 REWLFFDKPR RAFESGNRKQ RSLPDYNGRG WHESRKQVMN EFGGLKRSYY MDPQPLNHFE 300 WHLYEYEINK CDACALYRLE LKLVDGKKSA KGKPVNDTVS YQHKHMGRLS DGFSSEKKCC 360 FKGRTKVNAK IGVGNFFSHC KCSGTNE

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MGKGSKNNCK SASHKLFKDK AKNRVDDLQG MFLDLQFARK ESRGIDVAVL EEQLHQMLRE  60
WKAELNEPSP ASSLQQVRTA FIGGSLGSFS SDICRLLQLC EEEDDATSIL VVPKPEPNDQ  120
SLQVGDIAAS QERYAVNQGQ HECGFPLVDQ CKESPSQVQS VHFGIVQDLL KAMNEGPPGM  180
GPVLRPAGIG LKDGLLFAAL SAKTQGKDVG IPECQGAATA KSLWNALELF DLLVLDGELI  240
REWLFFDKPR RAFESGNRKQ RSLPDYNGRG WHESRKQVMN EFGGLKRSYY MDPQPLNHFE  300
WHLYEYEINK CDACALYRLE LKLVDGKKSA KGKPVNDTVS YQHKHMGRLS DGFSSEKKCC  360
FKGRTKVNAK IGVGNFFSHC KCSGTNE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3487	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015576892.1	0.0	transcription factor VOZ1 isoform X2
Swissprot	Q9SGQ0	1e-112	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A072UMQ9	1e-178	A0A072UMQ9_MEDTR; Putative transcription factor VOZ family
STRING	Bra010864.1-P	1e-169	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6667	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-114	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]