PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G1895

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 248aa MW: 27423.3 Da PI: 7.0948

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G1895	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.5	2.7e-32	52	109	2	60
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++vrY+eClkNhA+s+GghavDGC Ef+++ g+egt++alkCaAC+CHRnFHR+e+e e Gh_A06G1895 52 TTVRYRECLKNHAVSIGGHAVDGCYEFIAA-GDEGTVEALKCAACNCHRNFHRKETEGE 109 589************************9.999*******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.4E-30	54	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.0E-28	55	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-22	55	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.171	56	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.8E-32	174	247	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.14E-20	175	246	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	6.1E-28	185	242	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MDFDEHDDQE EEMGMAVPPG YDSLGTLSET WSKPGPTTTG GGDGFARKVG STTVRYRECL 60 KNHAVSIGGH AVDGCYEFIA AGDEGTVEAL KCAACNCHRN FHRKETEGES NVYNYNPHYH 120 HHHHQQYPQF SPYYRAPPPA GYLHLTPPSQ HRPLALPAAS GGGGDSREEE DVSNPSSSGG 180 GGGSKKRFRT KFTAEQKEKM LDFAGKLGWR IQKHDEAAIQ QFCEETGVKR HVLKVWMHNN 240 KNTLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	9e-29	184	243	16	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616214	1e-159	JX616214.1 Gossypium hirsutum clone NBRI_GE60696 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017644033.1	0.0	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	Q9SB61	5e-76	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A2P5YCS7	1e-165	A0A2P5YCS7_GOSBA; Uncharacterized protein
STRING	Gorai.010G036300.1	1e-158	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4505	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-71	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]