PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G1858
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 273aa    MW: 30428.9 Da    PI: 5.1795
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G1858genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-101992391055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Gh_A06G1858 199 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 239
                  9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-14189255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-12194248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.26E-12198243No hitNo description
PfamPF000109.4E-8199239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MESLANFPNG EWEYSFNKLF SIDDHLDFSF PLEHDEGLSF INPEINEILL PSSNAFDYNS  60
VATYDLTGSN HVAVTNDITM SFDSFPPLFP STPMEGTVNN VIEDLNTKKR PRAMSKGCKN  120
VQRSKKNRNE RECNNYIGVE NGHSSSTTCS SEDDSVCQDI NSNGGGATSD TKASQALNLN  180
GKARASRGSA TDPQSLYARK RRERINERLR ILQNLVPNGT KVDISTMLEE AVHYVKFLQL  240
QIKLLSSDDL WMYAPIAYNG VDVALNKKIS TLL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Roots. {ECO:0000269|PubMed:12679534}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016717713.10.0PREDICTED: transcription factor bHLH85-like
SwissprotQ84WK08e-61BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A1U8LWA40.0A0A1U8LWA4_GOSHI; transcription factor bHLH85-like
STRINGGorai.010G025400.11e-165(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-47bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]