PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A06G1811 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 762aa MW: 83678 Da PI: 6.2632 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.1 | 2.7e-07 | 227 | 246 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffar G+C G++C+F H Gh_A06G1811 227 ICDFFAR-GWCIKGSSCRFLH 246 6******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.089 | 222 | 249 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 222 | 246 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-5 | 227 | 246 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 762 aa Download sequence Send to blast |
MSSSTSAAVP RAGNDDEIRA ASIMEREINS SDMEIDDDDE NEEDLQSSSN RNDAGNVVES 60 RGHDGQLGSD LSSTPGNCEP RIPAKTLNVG EGSSNFEFSL CTNYVGSKYS VSGKEPAKEN 120 GIQEYIGNGK DSRNMLERKA SQDYPDQHTN GKGHFVVDES NSLPVGYHSG GVNNDLGFEE 180 KNKQMDVQTD DDKRKIKSRF HRSAAPQTSA GSLSPSSNSE NKRPALICDF FARGWCIKGS 240 SCRFLHIKDG GKNPGQLPEE DTAAADGKRA VELDEGFRSA AERSRSPASA DALPSSVVNK 300 TGLSSHFFSE RILPLGHDEN QRLHLFHEMN KFPLLQSKDK SLGTAPASQW FSASTDDFGP 360 SKDVRQNGIG QNLPVSLSDR STFGNGFLPE YKSSLSGSVT SLGDIYSENQ SHHVSTHLVS 420 LPLNFSLSAC SLGAQKMLDS DRGRHTSKLS SLLQGPFPFS SSKPEKFLVN DIASDPLHFP 480 ENRIKISSDD WEPSVPFRPS FFVTSGISSP RSEYDPLRDS IDVSNAGERP LKFSFSNQGP 540 SLLNVADPPT YGNSASRRPL LPECNDDKRT ASCHNGDHEN LVNNNCNPSG KDSLTTDAND 600 GTSAVDMQNG TLVKEEISSV ASHDKDISKA NKNDRDHDGR HRRGRSRCKK DLEVDRAREK 660 NEIDVEVEHK ADGDYKESKA MRHFHAALVD LIKELLKPTW REGHLSKDAH NTIVKKAVDK 720 VFGSIQPHQL PVTFESVKQY LSSSQPKITR LVEGYIEKYK KS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.21505 | 0.0 | boll |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX582513 | 2e-40 | JX582513.1 Gossypium hirsutum clone NBRI_GE15352 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017639310.1 | 0.0 | PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 | ||||
TrEMBL | A0A2P5XD90 | 0.0 | A0A2P5XD90_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.010G256500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15617 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 4e-51 | C3H family protein |