PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G1585
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 275aa    MW: 31321.2 Da    PI: 5.5721
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G1585genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.12.4e-25128188259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqK++  s++prsY+rC+++   gC++ k+v+r ++d ++ +itY g+H+++
  Gh_A06G1585 128 EDGHAWRKYGQKNILHSKHPRSYFRCSHKhdqGCSAIKQVQRMEDDAQMYHITYIGTHTCR 188
                  8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-25113188IPR003657WRKY domain
PROSITE profilePS5081119.497122185IPR003657WRKY domain
SuperFamilySSF1182901.7E-23124188IPR003657WRKY domain
SMARTSM007743.2E-35127189IPR003657WRKY domain
PfamPF031069.2E-25128188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDTLYPWPEP ETLSSNKKRV IQKLVEGQQC ATELQVIVLH NNKPPQQAEE LVQKILWSFN  60
QTLSMLAEAG HHDEVISQNQ ATCNDDCKSQ DSSESSKRSL SAFVKDKRGC YKRKRFAQTK  120
IVVSDKIEDG HAWRKYGQKN ILHSKHPRSY FRCSHKHDQG CSAIKQVQRM EDDAQMYHIT  180
YIGTHTCRDQ YSSMATPRID SPSPILKLES EEQATTPSNV TDLDSMTMWT DVMMGGVGFE  240
TDVVSNMYSC TEITCLDLEP VELENGLLFD DTDFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-25122188369OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.91930.0boll| leaf| ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310910.0KF031091.1 Gossypium hirsutum WRKY transcription factor 46 (WRKY46) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016733754.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A1U8N7I50.0A0A1U8N7I5_GOSHI; probable WRKY transcription factor 70
STRINGGorai.010G219200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40612757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-42WRKY DNA-binding protein 70