PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G1086
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 248aa    MW: 27990.6 Da    PI: 9.2747
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G1086genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26.1e-161259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd +l+ +v+++G  +W++ a+  g+ R++k+c++rw +yl
      Gh_A06G1086 12 KGPWSSEEDHKLIAYVTRYGIWNWTAMAKAAGLQRSGKSCRLRWMNYL 59
                     79******************99************************97 PP
2Myb_DNA-binding56.18.8e-1865108146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T eE+e ++d++++lG++ W+ Ia++++ gRt++++k++w++
      Gh_A06G1086  65 RGNFTREEEETILDLHERLGNR-WSVIASRLP-GRTDNEIKNYWHT 108
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.695759IPR017930Myb domain
SuperFamilySSF466892.84E-3010106IPR009057Homeodomain-like
SMARTSM007177.2E-101161IPR001005SANT/Myb domain
PfamPF002491.7E-131259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-231366IPR009057Homeodomain-like
CDDcd001671.09E-81459No hitNo description
PROSITE profilePS5129425.03560114IPR017930Myb domain
SMARTSM007173.0E-1664112IPR001005SANT/Myb domain
PfamPF002496.7E-1665108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2667114IPR009057Homeodomain-like
CDDcd001674.19E-1267110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAKSDEKTTL RKGPWSSEED HKLIAYVTRY GIWNWTAMAK AAGLQRSGKS CRLRWMNYLR  60
PGIKRGNFTR EEEETILDLH ERLGNRWSVI ASRLPGRTDN EIKNYWHTRL SKRLRHNLVP  120
KSGPFQIPNV ETEQESSPEI ALPPAIAIKE SNVETSGAIQ LPLSSSNPAM KIDESQTNCS  180
FKAYGGLQSI FEQTFTAEGS YIVENSKAIY SVPGVSTATS QLARFQYLGN SCTDVWHKFL  240
TNEIIYGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29101145108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016755472.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1U8PWE20.0A0A1U8PWE2_GOSHI; myb-related protein Myb4-like
STRINGGorai.010G148300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.15e-52myb domain protein 14