PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0917
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 313aa    MW: 34226.3 Da    PI: 6.6261
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0917genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30157215259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rsaedp++++ tYegeHnh+
  Gh_A06G0917 157 RDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSAEDPSILVATYEGEHNHH 215
                  7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-29146215IPR003657WRKY domain
PROSITE profilePS5081125.488151217IPR003657WRKY domain
SuperFamilySSF1182903.01E-25153215IPR003657WRKY domain
SMARTSM007742.1E-34156216IPR003657WRKY domain
PfamPF031066.1E-25158215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEPAWVDTTL DLNINPCFRT NKAMKREFEG DVAESAPVKY ESGVLVEELN RVSAENKKLT  60
EMLTVLCEQY YSLQHQFMEL VNKNPEIETT AAATTSSSKK RKAEWEDYGA NMIGFSGNTE  120
TSSSDDGSPK TPKDCIKPKV SRVQVRTNPS DNSLIVRDGY QWRKYGQKVT RDNPCPRAYF  180
KCSFAPSCPV KKKVQRSAED PSILVATYEG EHNHHEHHRS PPAEISLNSN NNTPSSNTGS  240
GPVSSAPTKA LASTVTLELL QPAGLGGDET ERAALQIDAP AIQQILVHQM AASLSRDPNF  300
TAALAAAISG RAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-201552141674Probable WRKY transcription factor 4
2lex_A2e-201552141674Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.100610.0boll| leaf| ovule| root
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5079290.0AY507929.2 Gossypium arboreum transcription factor WRKY1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001316979.10.0probable WRKY transcription factor 40
TrEMBLA0A1U8PQ080.0A0A1U8PQ08_GOSHI; probable WRKY transcription factor 40
TrEMBLQ6R8H10.0Q6R8H1_GOSAR; Transcription factor WRKY1
STRINGGorai.010G118300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24772872
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.14e-74WRKY DNA-binding protein 40