PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A06G0872 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 427aa MW: 45549 Da PI: 7.0455 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.3 | 4.3e-11 | 227 | 272 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Gh_A06G0872 227 HSIAERLRRVRIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 272 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.71E-16 | 220 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.17E-12 | 220 | 276 | No hit | No description |
PROSITE profile | PS50888 | 16.723 | 222 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-15 | 224 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-8 | 227 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.7E-12 | 228 | 277 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MQPCSREMQA MNSLLNPTQQ IPLQDLQING NSHHHQQIHV PSSSQFQYPT PTSTTHHDDS 60 FLEQILSSTT SFPWSDETGP PKPEDNNNAG FNYDEMVLAS KLRQHQINGG AAGNPFSAMK 120 MMLMMQQQQQ QQQMMLAGRP TVASSAAGGG ITTNHQGGEG SMQALYNVFG DGSLHGTMQA 180 KSFVGANSAT EMTQSQGSRP TAGEAVTAPE KPKQRVRARR GQATDPHSIA ERLRRVRIAE 240 RMKALQELVP NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAAAVA PLVSEGGGDC 300 IQTSANGGSH PRNSNGDQTP SANDRLTMTE HQVAKLMEED MGSAMQYLQG KGLCLMPISL 360 ATAISTATSR SRNPMINHEN PTNGSHLLIQ SSGGDGPSSP SMSVLTVQSA TMGNGGLEGG 420 AASVSKP |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF836432 | 0.0 | KF836432.1 Gossypium hirsutum bHLH4 transcription factor (bHLH4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016683127.1 | 0.0 | PREDICTED: transcription factor bHLH66-like isoform X1 | ||||
Swissprot | Q9ZUG9 | 1e-83 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A0D2UA59 | 0.0 | A0A0D2UA59_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G112200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3042 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 3e-83 | LJRHL1-like 1 |
Publications ? help Back to Top | |||
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