PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G0472

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

YABBY

Protein Properties

Length: 188aa MW: 21220.2 Da PI: 8.5807

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G0472	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	185.8	2.3e-57	7	173	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102 +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a+ + + +++ + ++ e+ +++l s + ++++ + ++ l+ Gh_A06G0472 7 VVPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAASQSLSWQDI--QAPNNAIED---YRRDLGSSSKCSHNKLSMRP--PLP 97 579**************************************9998877655555542..222223333...33344444444444444444..477 PP YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikee............iqrikasnPdishreafsaaaknWahfPkihfgl 170 +n +ee v+rPPekrqrvPsaynrfik + iqrika+nPdishreafs+aaknWahfP+ihfgl Gh_A06G0472 98 NNATEERV----VNRPPEKRQRVPSAYNRFIKYDilntinlygrlnIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 173 78777766....89**************752223333333337*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.3E-62	9	173	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSSCIEVVPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAASQSL 60 SWQDIQAPNN AIEDYRRDLG SSSKCSHNKL SMRPPLPNNA TEERVVNRPP EKRQRVPSAY 120 NRFIKYDILN TINLYGRLNI QRIKANNPDI SHREAFSTAA KNWAHFPHIH FGLMLETNNQ 180 TKMNNVSG

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT372781	4e-35	KT372781.1 Mentha spicata YABBY family protein 5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016754541.1	1e-125	PREDICTED: axial regulator YABBY 5-like isoform X1
Swissprot	Q8GW46	3e-78	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1U8PTS7	1e-123	A0A1U8PTS7_GOSHI; axial regulator YABBY 5-like isoform X1
STRING	Gorai.010G062900.1	1e-123	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-80	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]