PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0266
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 259aa    MW: 29921.7 Da    PI: 4.9634
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0266genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.4e-1961114356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++ +q+++Le+ F   +++  e++ +LA++lgL+ rqV +WFqNrRa++k
  Gh_A06G0266  61 KKRRLSMHQVKALEKNFDVGNKLEPERKVKLAEELGLQPRQVAIWFQNRRARWK 114
                  56689************************************************9 PP
2HD-ZIP_I/II125.81.9e-4060152193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls +qvk+LE++F+  +kLeperKv+la+eLglqprqva+WFqnrRAR+ktk lEkdy++Lk++ydalk + ++Leke+  L ++l++
  Gh_A06G0266  60 EKKRRLSMHQVKALEKNFDVGNKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKVLEKDYAMLKANYDALKLDYDNLEKEKLGLIAKLRD 152
                  69***********************************************************************************99999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-1849116IPR009057Homeodomain-like
PROSITE profilePS5007117.47556116IPR001356Homeobox domain
SMARTSM003894.6E-1859120IPR001356Homeobox domain
CDDcd000867.66E-1661116No hitNo description
PfamPF000463.1E-1661114IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-1968115IPR009057Homeodomain-like
PRINTSPR000316.8E-68796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000316.8E-696112IPR000047Helix-turn-helix motif
PfamPF021837.8E-13116157IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MKRLSPSPSL DAFMSISQPK VDYAEEKSSK KHQIYSKEFQ AMLDGLDEED SLEEGGQATE  60
KKRRLSMHQV KALEKNFDVG NKLEPERKVK LAEELGLQPR QVAIWFQNRR ARWKTKVLEK  120
DYAMLKANYD ALKLDYDNLE KEKLGLIAKL RDLKSKLKEE CPSFSVRNKE QGFCENDDDD  180
CNGIVKEESN VMNGSSSSSD SSNNHKWFKP FESRMVMGYT YDEPELVEVE ERCMFSAEES  240
CGFFSVDQAP SLQWYFTGL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431211e-172AC243121.1 Gossypium raimondii clone GR__Ba0142D21-hnv, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643819.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1
TrEMBLA0A0D2R1L81e-173A0A0D2R1L8_GOSRA; Uncharacterized protein
STRINGGorai.010G037800.11e-174(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.19e-45homeobox protein 6