PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0223
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 413aa    MW: 44841 Da    PI: 6.5112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0223genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-10254302355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Gh_A06G0223 254 NSHSLAERVRREKISERMKLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 302
                  58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-17249318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-11249306No hitNo description
PROSITE profilePS5088815.586251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-17252319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7254302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10257307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MASDGNDDIG FKHHSLMNTN NPLCDKVDGM ALSSMYNTKS SNSSDPFFGS GWDPMVSLNQ  60
SESLGGGSSM VSHSGFVNSH YPLLMENQGI CGTSHFSQYQ SDPSFVELVP KIQGFGTGNL  120
SEMVGPMSLP RCTQGYAMNH EGGIERASTN STQSRDDRQI SEEGVVGASP NGKCRKRVHE  180
ANQNADEELK KDPSGESCDV QKEHDSKKQK TEQNATANSR GKQVVKQAKD SSQTGEAPKE  240
NYIHVRARRG QATNSHSLAE RVRREKISER MKLLQELVPG CNKITGKAVM LDEIINYVQS  300
LQQQVEFLSM KLATVNPELN IDLERILSKD ILHSRGGNAA AVGFNPGVNS SHPFSSGIFP  360
GTISGIPNTN PQFPPLPPQT VLDNELQNLF QMGFDSSSAM DSLGPIGRLK PGL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.62890.0boll| ovule
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016717767.10.0PREDICTED: transcription factor bHLH74-like
RefseqXP_016717768.10.0PREDICTED: transcription factor bHLH74-like
TrEMBLA0A1U8LWG60.0A0A1U8LWG6_GOSHI; transcription factor bHLH74-like
STRINGGorai.010G028200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.15e-91bHLH family protein