PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G3748
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 495aa    MW: 54780.7 Da    PI: 5.6551
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G3748genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS368.49.8e-1131104881374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetsekn...sseelaalklfsevsPilkf 93 
                  +v+lL+++Aea+   +++la+ +L rl+el+sp++ ++m+RlaayfteAL++ l +s+ + +k l +  ++++++   +++ laa++l++++sP++kf
  Gh_A05G3748 110 MVHLLMAAAEALMGANKSLARVILVRLKELVSPSDgTNMERLAAYFTEALQSLLEGSGGGHSKHLiTNGPQHHRDkhrEADMLAAFQLLQDMSPYVKF 207
                  689***************************888766********************998888877433333333346799****************** PP

         GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                  +h+taNqaIleav +++r+Hi+D+di++G+QW++L+qaL sR+egpp  +lRiT++++ ++g  s  +++etg+rL+ fA+++g pf+f+    ++ e
  Gh_A05G3748 208 GHFTANQAILEAVTHDRRIHIVDYDIMEGIQWASLMQALVSRKEGPPtpHLRITALSRGSNGwrSIGTIQETGRRLTAFASSIGQPFSFHQCRLDSDE 305
                  *******************************************887666*********99999999*************************9999*** PP

         GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerik 284
                  ++++++L++ +gEal++n++l+l ++ +++ s+     ++L+  k+l+P++v+vve+ea   +++ F+ rf+++l++ysa+fdslea++p + ++r+ 
  Gh_A05G3748 306 TFRPSALKLVRGEALIINCMLNLPHFSHRPPSSVA---SFLSGAKTLNPRLVTVVEEEAGPiGDGGFMGRFMDSLHHYSAVFDSLEAGFPMQCRARAL 400
                  **************************988888877...9*******************9988************************************ PP

         GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                  vEr++lg++i   +++  ++r+e  e+ ++W+e+l+++GF+pv++s  + +qaklll  ++ dgyrvee  ++ +vl Wk+r+L+s+S W+
  Gh_A05G3748 401 VERVILGPQIAGSLTQIYRNRNE--EESGRWSEWLDTMGFNPVSISFANHCQAKLLLGLFN-DGYRVEELaNNRVVLDWKSRRLLSASIWT 488
                  ******************99766..556*********************************.******98477788**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.39184468IPR005202Transcription factor GRAS
PfamPF035143.4E-110110488IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MAMAIDNAFE VDFCSYSTST TTTTTAGEDP ACTWNHWGSP VVDWGSLSSE RDEFQDLIES  60
MMDDGAGFEL TRLGHDHETS NSVSVSVSVS TDTMVAYEET NGEDFKGLRM VHLLMAAAEA  120
LMGANKSLAR VILVRLKELV SPSDGTNMER LAAYFTEALQ SLLEGSGGGH SKHLITNGPQ  180
HHRDKHREAD MLAAFQLLQD MSPYVKFGHF TANQAILEAV THDRRIHIVD YDIMEGIQWA  240
SLMQALVSRK EGPPTPHLRI TALSRGSNGW RSIGTIQETG RRLTAFASSI GQPFSFHQCR  300
LDSDETFRPS ALKLVRGEAL IINCMLNLPH FSHRPPSSVA SFLSGAKTLN PRLVTVVEEE  360
AGPIGDGGFM GRFMDSLHHY SAVFDSLEAG FPMQCRARAL VERVILGPQI AGSLTQIYRN  420
RNEEESGRWS EWLDTMGFNP VSISFANHCQ AKLLLGLFND GYRVEELANN RVVLDWKSRR  480
LLSASIWTSP PDSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-5810348812379Protein SCARECROW
5b3h_A5e-5810348811378Protein SCARECROW
5b3h_D5e-5810348811378Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:15961668}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709430.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A1U8L4900.0A0A1U8L490_GOSHI; nodulation-signaling pathway 2 protein
STRINGGorai.009G244200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-166GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]