PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2981
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 192aa    MW: 22390.7 Da    PI: 9.3535
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2981genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.62.5e-161053245
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 r e+   rq  +skR++gilKKA+EL +LC+++va++  s++g+
  Gh_A05G2981 10 RLEDLKARQAKYSKRKTGILKKAKELNILCEVDVALLFSSPSGR 53
                 5678889*********************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.7E-20180IPR002100Transcription factor, MADS-box
SMARTSM004324.5E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.698161IPR002100Transcription factor, MADS-box
CDDcd001203.95E-19257No hitNo description
PRINTSPR004043.0E-14323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-161156IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGRKKLKIQR LEDLKARQAK YSKRKTGILK KAKELNILCE VDVALLFSSP SGRPTLFVGQ  60
NSTGLSSILK RLSNLSFEER EERRAYTIEM LKKIYENSES EFDLLSLPHA TNADTLKLYE  120
DELQELKDKL VEKSKILRDW RNPNNVEDLN QIKMMEDHLI ASLNGLRSRR NQLAMEQQIR  180
ERELEGNENL ET
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614088.11e-135PREDICTED: agamous-like MADS-box protein AGL65
TrEMBLA0A0D2TLC11e-121A0A0D2TLC1_GOSRA; Uncharacterized protein
STRINGGorai.012G090100.11e-121(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.13e-30AGAMOUS-like 94