PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2553
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 339aa    MW: 36731.5 Da    PI: 6.5053
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2553genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17245278134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Gh_A05G2553 245 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 278
                  99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.7E-739333IPR016679Transcription factor, GATA, plant
SMARTSM004019.5E-16239289IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.147239275IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15244302No hitNo description
CDDcd002022.59E-14244301No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14244276IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440245270IPR000679Zinc finger, GATA-type
PfamPF003202.3E-15245278IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MIGSTDFIDE IDCGSFFDDL IDFPNGDVEA YDSTAVINAA AFPTILTTQP ESLPFSDSVF  60
LNNSASELST ELFVPYEDIV QLEWMSKFVE DTQCGASLTK KKEDSSSISE GSNNQFQTCS  120
PVSVLESSSS SSGVKPLPHS PETSAPGKCG RPRSKRPRLA TFNHLPGVQM TSPASSVNEN  180
DIPQPFAVPK VLSDSENYAE SRLLIKLPKQ VNPEHKKKKI KLSVSAAAAI ADNSQNPTGQ  240
AVTKCMHCEI TKTPQWRAGP MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FVPSVHSNSH  300
KKVLEMRTKS CALAPTTTMV ANNLPELIPN KSNPALDYI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.104790.0boll| leaf| ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6208922e-60JX620892.1 Gossypium hirsutum clone NBRI_GE67259 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016748386.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016748387.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A1U8PB080.0A0A1U8PB08_GOSHI; GATA transcription factor
STRINGGorai.009G313700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.29e-47GATA family protein