PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2506
Common NameNAC13
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 591aa    MW: 66269.2 Da    PI: 4.4524
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2506genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.1e-5191351128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  l+pGfrFhPtdeelv +yLk+k+ +++   +++i+ +diy++ePwdLp k k+k+++ ewyfFs  dkky +g+r+nrat++gyWk+tgkd+++   +
  Gh_A05G2506   9 LAPGFRFHPTDEELVRYYLKRKILNRP--SFDAISVIDIYRSEPWDLPdKsKLKSRDLEWYFFSALDKKYGNGSRTNRATERGYWKTTGKDRAIRF-R 103
                  579**********************99..3478**************95347777888*************************************9.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++vg+kktLv++kgrap+ge+t+Wvmheyrl
  Gh_A05G2506 104 ERVVGMKKTLVYHKGRAPRGERTNWVMHEYRL 135
                  99****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-607158IPR003441NAC domain
PROSITE profilePS5100557.739158IPR003441NAC domain
PfamPF023656.5E-2811135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MGRDSATSLA PGFRFHPTDE ELVRYYLKRK ILNRPSFDAI SVIDIYRSEP WDLPDKSKLK  60
SRDLEWYFFS ALDKKYGNGS RTNRATERGY WKTTGKDRAI RFRERVVGMK KTLVYHKGRA  120
PRGERTNWVM HEYRLTDETL EKGGIQQDAF VLCRVFQKSG SGPKNGEQYG APFIEEEWED  180
DEAVFVPGQQ DASAYEEAAN EDAFVEVNDI DQNLDIGNPS ENNILPLNGY CGESSNHVEH  240
SREFSEDDQK PPNSMHENAF LPSSFYYGES SNCGEHSMEF KEDYQKPIRM HATEGDSKPH  300
HELVVADSPE QDLIATNGKP VKDEYVLEPI ENITSANYVL GDPYLDVTSY LPTNDELFLE  360
ANDFSNPIYP ESELFDINEY LSFDDADDQS LAFDYDEIVG SEIPVSGQEP LTETHTNEGT  420
EQDLNAGEHV EEHGNSDASS SKQELEATEF DLGTKYPFMK RASHMLGSLP APPAFASEFP  480
PKDAAIKLNS ASHASSSVHV MAGMIRITDT TSSGNRLDWS YGKNGNLNIV LSFSLPQGDI  540
NSSSFLPMAS LLTGKTGPVL ARGWFFLMLF SVLIISASVK IGTCFCTRYG L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-45816416171NO APICAL MERISTEM PROTEIN
1ut4_B7e-45816416171NO APICAL MERISTEM PROTEIN
1ut7_A7e-45816416171NO APICAL MERISTEM PROTEIN
1ut7_B7e-45816416171NO APICAL MERISTEM PROTEIN
3swm_A9e-45516416174NAC domain-containing protein 19
3swm_B9e-45516416174NAC domain-containing protein 19
3swm_C9e-45516416174NAC domain-containing protein 19
3swm_D9e-45516416174NAC domain-containing protein 19
3swp_A9e-45516416174NAC domain-containing protein 19
3swp_B9e-45516416174NAC domain-containing protein 19
3swp_C9e-45516416174NAC domain-containing protein 19
3swp_D9e-45516416174NAC domain-containing protein 19
4dul_A7e-45816416171NAC domain-containing protein 19
4dul_B7e-45816416171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.105440.0leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root meristem (Ref.1). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9141440.0JQ914144.1 Gossypium hirsutum NAC domain protein 13 (NAC13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606964.10.0PREDICTED: NAC domain-containing protein 53
SwissprotQ84K001e-167NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A2P5W8900.0A0A2P5W890_GOSBA; Uncharacterized protein
STRINGGorai.009G309000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31922762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-157NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Shah ST, et al.
    Isolation and expression profiling of GhNAC transcription factor genes in cotton (Gossypium hirsutum L.) during leaf senescence and in response to stresses.
    Gene, 2013. 531(2): p. 220-34
    [PMID:24036432]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  5. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  6. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  7. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]