PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2378
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 1110aa    MW: 121769 Da    PI: 6.7946
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2378genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.28.3e-24128190159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST.TEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp.kvveitYegeHnhe 59 
                  ++Dg++WrKYGqK++ +s++prsY+rC  +   gC+++k+v+r ++d+ +++++tY g+H+++
  Gh_A05G2378 128 VEDGHAWRKYGQKQILNSKHPRSYFRCPRKydqGCRATKQVQRLEDDGsQMFQTTYIGTHTCR 190
                  58*************************9988889**********9997479**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-23121190IPR003657WRKY domain
PROSITE profilePS5081117.855123187IPR003657WRKY domain
SuperFamilySSF1182905.23E-22125190IPR003657WRKY domain
SMARTSM007745.5E-35128191IPR003657WRKY domain
PfamPF031067.6E-24129190IPR003657WRKY domain
SMARTSM002200.002297591IPR000719Protein kinase domain
PROSITE profilePS5001112.697309591IPR000719Protein kinase domain
SuperFamilySSF561127.08E-17343594IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.104.9E-11380553No hitNo description
Gene3DG3DSA:1.25.10.102.1E-42554573IPR011989Armadillo-like helical
SuperFamilySSF483713.42E-31600861IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.102.1E-42608862IPR011989Armadillo-like helical
PROSITE profilePS500779.646673711IPR021133HEAT, type 2
PROSITE profilePS500778.887830868IPR021133HEAT, type 2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006409Biological ProcesstRNA export from nucleus
GO:0006468Biological Processprotein phosphorylation
GO:0000049Molecular FunctiontRNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1110 aa     Download sequence    Send to blast
MASVSAWPEG APTSNKERVI EELVNGQECA KQLEILLHNW CEKNGRLSAE ELVHKIFASF  60
DHALSLLTAV ESAEDSQNQA TSYDDSPCCN GRSEDSTNSR KKLASKEKRG CYKRRRDEHA  120
WTVVSSTVED GHAWRKYGQK QILNSKHPRS YFRCPRKYDQ GCRATKQVQR LEDDGSQMFQ  180
TTYIGTHTCR PDSFKAPQII IDSEPRESYS KFSYGSSNPK MPTKKLHEIT PPVKQETKEE  240
TPTTSGLTDM DSVVMWKDII GAEYGDVASN VYTSTEITSQ NLELDLVIKP VEFEDDFQFD  300
ENHRRKKMLK FLKGVVGGSG AGLKDLPYNI GDPYPSAWGS WSHFRGTSKD DGSPVSIFSL  360
SGSNPQDGHL AAGRNGVKRL RTVRHPNILS FLHSTEVESF DGSSSKVTIY IVTEPVMPLS  420
EKIKELGLEG TQRDEYYAWG LHQIAKAVSF LNNDCKLVHG NVCLSSVVVT QTLDWKLYAF  480
DVLSEYDGAN ATATGPMLQY EWLVGSQYKP TELAKCDWAT IRKSPPWAID SWGLGCLIYE  540
IFSGMKLGKT EELRNTASIP KSLLPDYQRL LSSMPSRRLN TSKLIENSEY FQNKLVDTIH  600
FMEILSLKDS VEKDTFFRKL PNLAEQLPRP IVLKKLLPLL ASALEFGSAA APALTALLKM  660
GSWLSAEEFS LKVLPTIVKL FASNDRAVRV ALLQHIDQFG ESLSAQVVDE QVYPHVATGF  720
ADTSAFLREL TLKSMLILAP KLSQRTLSGS LLKYLSKLQV DEEPAIRTNT TILLGNIASY  780
LNEGTRKRVL INAFTVRALR DTFSPARGAG VMALCATSSY YDMTEIATRI LPNIVVLIID  840
PDSDVRSKAF QAVDQFLQIV KQYNEKGNAE DTSGAGSLGI SSMPGNASLL GWAMSSLTLK  900
GKASDQAPVA TANSVTPATT TASTASSGLI ETPSTAPVHR VSSSTDFADQ PMPPSPTSTD  960
GWGEIENGIH EEHDSDKDGW DDIEPLDEPK PSSALANIQA AQKRPVSQPV SQPKPQASTS  1020
LRPKSTVKAA KDEDDDLWGS IAAAPPKSAS RPLNVKTAGA VDDDDPWAAI AAPPPTTKVK  1080
PLSAGRGRGN RAAAPKLGAQ RINRTSSTGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3vwa_A3e-3132684911519Cytoplasmic export protein 1
3vwa_B3e-3132684911519Cytoplasmic export protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199115RKKLASKEKRGCYKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.64080.0boll| ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8258690.0KJ825869.1 Gossypium hirsutum WRKY protein 27 (WRKY27) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606120.10.0PREDICTED: N-terminal kinase-like protein
TrEMBLA0A0D2TTU70.0A0A0D2TTU7_GOSRA; Uncharacterized protein
STRINGGorai.009G292700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-40WRKY DNA-binding protein 70