PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2095
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 651aa    MW: 73699.1 Da    PI: 4.6361
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2095genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.91.4e-51211472128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  ppGfrFhPtdeelv +yLk+k+ ++kl+l ++i+e+d+yk++P++Lp +  +k+++++w+fFs+rd+ky++  r+nrat +gyWkatgkd++v++ ++
  Gh_A05G2095  21 PPGFRFHPTDEELVLYYLKRKICRRKLKL-DIIRETDVYKWDPEELPaQsILKSGDRQWFFFSPRDRKYPNAARSNRATGHGYWKATGKDRTVTC-NS 116
                  8****************************.99**************96346778999**************************************.99 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg+kktLvfy+grap ge+tdWvmhey+l
  Gh_A05G2095 117 RTVGVKKTLVFYRGRAPIGERTDWVMHEYTL 147
                  9****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-5916170IPR003441NAC domain
PROSITE profilePS5100554.59720170IPR003441NAC domain
PfamPF023651.8E-2721147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MTVAAKAATT DSCFGEDQVW PPGFRFHPTD EELVLYYLKR KICRRKLKLD IIRETDVYKW  60
DPEELPAQSI LKSGDRQWFF FSPRDRKYPN AARSNRATGH GYWKATGKDR TVTCNSRTVG  120
VKKTLVFYRG RAPIGERTDW VMHEYTLDEE ELKRCQNVKD YYALYKLYKK SGPGPKNGEQ  180
YGAPFKEEEW ADEEYASKAV DVITPVKQPN EAIPDDIVKA KNQIQSPLND IEEFMRQFTA  240
EPALPQAQAH FDNILPRLAG EEEIQSTLLD TSPRDVLLPK PLEVVHDHAS FELSQSPTSR  300
LQLLEAPEVT SVSDQFEQIP QICEEDFLEI DDLTSNVEKP VENGLQFNDW DGLGEFDLYR  360
DAAMFLQDIG PIEQGIVPFS YTENMINQVS YPLEPQLQHQ SNTNHMDQEL QFQLNATGFD  420
KQLQLQPNAF GNNQQVQSQL NTISDNQPQL NAFEDGILNQ VGYQFHSSAN NMMDQQLVPN  480
STVDQVDYQL PFQSFGNEME RQLQADQING SIWTNDQSGD VFTPSGSNLG NASSSSGLVY  540
NGNNQDEGDK KGEGASRFST ALWSFVDSIP TTPASASESP LVNRAFERMS SFSRLRMNVR  600
NTNALTVNGV TTARRRSRNK GFFLFSILGA LCAILWFLIG MVRVVRSSIS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-492114716140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.33300.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016748752.10.0PREDICTED: NAC domain-containing protein 16-like
TrEMBLA0A1U8PC290.0A0A1U8PC29_GOSHI; NAC domain-containing protein 16-like
STRINGGorai.009G260000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-124NAC domain containing protein 17