PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1820
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 376aa    MW: 41407.9 Da    PI: 4.6103
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1820genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-103023421055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Gh_A05G1820 302 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 342
                  9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-14292358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-12297352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.11E-12301346No hitNo description
PfamPF000101.5E-7302342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MKSVAAFHDG AWDSFNIMFS NEDHLDFAHQ VLNQFSFPLE HDERLSFINP STFVPNLEAD  60
MSIAGLSRSL FSSSNALDSH FHYKTQESNQ SSNSSSNTFV PLPNYETSFL GGSSHMAVTN  120
DITMSLDIPM DIGGGSDKIT DSFPPAFPNI AMDDTVNVIE DSSTDCLPKL DGGYPADSAV  180
LADEILLKRQ FDVLELHDEG DKISTYSSET TKKRPRVSKD AAKAWNNVQL KKNNLNGSEE  240
STIGSDGQSS STSSSDDDNV CRDTNEVALA TSDPKASQAV NLNGKKRASR GSATDPQSLY  300
ARKRRERINE RLRILQNLVP NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DELWMYAPIA  360
YNGVDIGLND KICTLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284304KKRASRGSATDPQSLYARKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017604234.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
TrEMBLA0A1U8PDU50.0A0A1U8PDU5_GOSHI; transcription factor ABORTED MICROSPORES-like
STRINGGorai.009G219100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2002446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-43bHLH family protein