PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1526
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 395aa    MW: 43986.6 Da    PI: 6.3514
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1526genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.55.5e-53211481128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeelv++yL+ kv + ++     i+evd++++ePw+Lp  +k +e+ewyfFs rd+ky++g r+nrat +gyWkatgkd+ev+s+ +g
  Gh_A05G1526  21 LPPGFRFHPTDEELVTFYLASKVFNGSFCG-VEIAEVDLNRCEPWELPDVAKMGEREWYFFSLRDRKYPSGLRTNRATGAGYWKATGKDREVYSAsTG 117
                  79*************************877.45***************8888899**************************************98788 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +l g+kktLvfykgrap+gekt+Wvmheyrl
  Gh_A05G1526 118 ALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 148
                  89***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-6315170IPR003441NAC domain
PROSITE profilePS5100559.89121170IPR003441NAC domain
PfamPF023656.4E-2822148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MLAVEEILSE LAEEEVNGHG LPPGFRFHPT DEELVTFYLA SKVFNGSFCG VEIAEVDLNR  60
CEPWELPDVA KMGEREWYFF SLRDRKYPSG LRTNRATGAG YWKATGKDRE VYSASTGALL  120
GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFSCRPSCKE EWVICRIFHK TIEKKNALAQ  180
GQSYVLAVSS SSTTFLPPLL ETPTPLLKSE SQTLMQAHNS FLIHRHENDL KSLINPVVSQ  240
SQSQLFPSNG LQPSYSPTST FATTDKNAVT NTTTTTSSAA MLFKSLFSHQ DCLFKEQAAF  300
PKQCKAEADF SYLNLPAANT LNWMDRIHPS PPCQNPLFFD MDYSVLEFAE GVRGTARGDT  360
NAHDMSTSIA INRASGQMIL NPPTTTASGE SGPLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-512117017165NO APICAL MERISTEM PROTEIN
1ut4_B2e-512117017165NO APICAL MERISTEM PROTEIN
1ut7_A2e-512117017165NO APICAL MERISTEM PROTEIN
1ut7_B2e-512117017165NO APICAL MERISTEM PROTEIN
3swm_A3e-512117020168NAC domain-containing protein 19
3swm_B3e-512117020168NAC domain-containing protein 19
3swm_C3e-512117020168NAC domain-containing protein 19
3swm_D3e-512117020168NAC domain-containing protein 19
3swp_A3e-512117020168NAC domain-containing protein 19
3swp_B3e-512117020168NAC domain-containing protein 19
3swp_C3e-512117020168NAC domain-containing protein 19
3swp_D3e-512117020168NAC domain-containing protein 19
3ulx_A3e-51121739171Stress-induced transcription factor NAC1
4dul_A2e-512117017165NAC domain-containing protein 19
4dul_B2e-512117017165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at the globular stage, mostly in the apical part of the embryo. During the triangular stage, confined to the boundary of emerging cotyledons. Later restricted to the center of the apical part of the embryo and to seedling apex, at the boundaries of the cotyledon margins and the boundaries between the SAM and the cotyledons. Localized in a one-cell-wide ring at the boundary between trichomes or lateral roots and epidermis. Accumulates at the boundaries between leaf primordia and the shoot meristem and between floral primordia and the inflorescence meristem. Found in the adaxial axils of secondary inflorescences and pedicels, and in axiallary buds. In flowers, expressed in a ring at the bases of sepals and petals. In carpels, confined to the boundaries between ovule primordia. In ovules, localized in a ring at the boundary between the nucellus and the chalaza. In the mature embryo sac, detected in the two polar nuclei of the central cell. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
UniprotTISSUE SPECIFICITY: In a general manner, present at the boundaries between mersitems and araising primordia. {ECO:0000269|PubMed:12837947}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472050.0KC847205.1 Gossypium hirsutum NAC domain protein NAC28 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016687971.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_016687972.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8511e-106NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A1U8JCD20.0A0A1U8JCD2_GOSHI; protein CUP-SHAPED COTYLEDON 3-like
STRINGGorai.009G186000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.12e-96NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]