PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G1373 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LSD | ||||||||
Protein Properties | Length: 173aa MW: 18335.6 Da PI: 5.6211 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 29.6 | 1.1e-09 | 85 | 109 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP G + +C++C tV Gh_A05G1373 85 CGSCRQLLSYPEGTRQAKCSCCETV 109 ************************9 PP | |||||||
2 | zf-LSD1 | 36.1 | 1.1e-11 | 123 | 147 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C lL+YP+G++sV+C++C V Gh_A05G1373 123 CDSCALLLMYPYGSSSVKCSSCLSV 147 **********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.8E-14 | 82 | 112 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.4E-7 | 85 | 109 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.1E-9 | 120 | 148 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.5E-8 | 123 | 147 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MGRADAGSSR PPPSPLIFSG SDPYSVSDRV DTGTAPQIAE SGSSPPPPLV FAGSDPYRVS 60 DRVDTSTASQ IAPSPEMAQM AQMVCGSCRQ LLSYPEGTRQ AKCSCCETVN FVLEAHQVGL 120 VRCDSCALLL MYPYGSSSVK CSSCLSVTEI GEHNRRPPWS VQQGQPTPPN SVH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.18391 | 0.0 | boll| ovule| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243102 | 2e-58 | AC243102.1 Gossypium arboreum clone GM226J06-jme, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016698155.1 | 6e-67 | PREDICTED: protein LOL2-like | ||||
Refseq | XP_017605048.1 | 6e-67 | PREDICTED: protein LOL2 | ||||
Swissprot | O65426 | 2e-38 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | A0A0B0NNA1 | 5e-91 | A0A0B0NNA1_GOSAR; Protein LOL2-like protein | ||||
STRING | Gorai.009G169900.1 | 8e-87 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13611 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 3e-34 | lsd one like 2 |