PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G1287

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 277aa MW: 30371.5 Da PI: 4.7515

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G1287	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96	2.5e-30	80	138	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dpk+++itY+ eHnh+ Gh_A05G1287 80 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSHVDPKMLVITYSCEHNHP 138 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-31	73	140	IPR003657	WRKY domain
PROSITE profile	PS50811	32.592	74	140	IPR003657	WRKY domain
SuperFamily	SSF118290	6.8E-26	75	140	IPR003657	WRKY domain
SMART	SM00774	9.5E-35	79	139	IPR003657	WRKY domain
Pfam	PF03106	6.2E-26	81	138	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MDAGDPSFNK ASNPYVTEQE LEDNDNASSE TGAESPPSTT FNDIKLSPKK GRRSIQKRVV 60 SVPIKDVEGS RFKGESAPPS DSWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CPARKQVERS 120 HVDPKMLVIT YSCEHNHPWP ASRHNTAAAK QAAAAAKAAA AAEASTATVT AVKNEPSTSQ 180 ADMEQESGTE ERFTDLTEDS ILTTGDEFAW FGEMETTSST VLESPLFTER DECDADVAMV 240 FPMKEEDESL FADLGELPEC SFVFRHQRNV GPRVGIC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-21	57	140	6	79	Disease resistance protein RRS1
5w3x_D	2e-21	57	140	6	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031079	0.0	KF031079.1 Gossypium hirsutum WRKY transcription factor 30 (WRKY30) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017605425.1	0.0	PREDICTED: probable WRKY transcription factor 65 isoform X1
Swissprot	Q9LP56	1e-87	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A2P5WBK0	0.0	A0A2P5WBK0_GOSBA; Uncharacterized protein
STRING	Gorai.009G160800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5383	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	3e-87	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]