PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1202
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 347aa    MW: 38824.1 Da    PI: 9.2111
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1202genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.31.7e-1723103274
     trihelix   2 WtkqevlaLiearremeerlr........rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
                  Wt +e+l+Liea++ ++er          rgk  + +W++v ++++++g+ rs++qC++kw+nl ++ykk++e +++ +++
  Gh_A05G1202  23 WTVNETLVLIEAKKMDDERRMkrsgdiegRGKPTELRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKVREYQRRTAER 103
                  *************977666662222222224799***************************************99986443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0851587IPR017877Myb-like domain
PfamPF138371.2E-1322101No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MKLVMADQGG DNIVTREYRK GNWTVNETLV LIEAKKMDDE RRMKRSGDIE GRGKPTELRW  60
KWVEDYCWRK GCLRSQNQCN DKWDNLMRDY KKVREYQRRT AERGEGTHSN EGSSYWEMEK  120
NERKVKNLPS NMLRLIYERL EEVVDKKGDK TAVAAGGSGL IPNIPYVMDR PITSVETSLP  180
PLLQHQLLAP IPAAIPLTLP APPHLPPPPI AAAAPLVQPP PLSYAQPLPT VDSDTSEYSD  240
SPPKRRKRGT GNGEGSSGGT ASANNSNEVG TAISKSASII VEAIQASEER EERRHRDLVS  300
LHERRLKMEE SKTEMDKRGL DGLVDAINKL ANSILALATH MKQSAPK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016749548.10.0PREDICTED: trihelix transcription factor ASR3-like isoform X1
TrEMBLA0A1U8PGW00.0A0A1U8PGW0_GOSHI; trihelix transcription factor ASR3-like isoform X1
STRINGGorai.009G150000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.19e-62Trihelix family protein