PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1149
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 383aa    MW: 41951.2 Da    PI: 9.9665
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1149genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.25.9e-1579166186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W+++ + +Li+a  e+  +l+rg+lk+++W+ev++ + +++ ++++pk   qCk++++ ++k+yk +k+    +  +  s++++f++l+
  Gh_A05G1149  79 CWSEDATGVLIDAWGERYLELSRGNLKQKHWKEVADIVsSREDYRKTPKtdiQCKNRIDTVKKKYKLEKAKIAAG--GGPSKWVFFEKLD 166
                  7*************************************856666666644449*****************99997..67778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-2577168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEEDEEIQSQ PSNAAAGSPS PSSLSPSSNG RITVTVAAAP PSESPPPEEP QLHEKTIVLA  60
LPPPQQTKNS GGGGGREDCW SEDATGVLID AWGERYLELS RGNLKQKHWK EVADIVSSRE  120
DYRKTPKTDI QCKNRIDTVK KKYKLEKAKI AAGGGPSKWV FFEKLDQLIG PTAKTAVNVA  180
TAADGGSGGS TGLLSKVPMG IPVGIRSSLN PLGVSQLHER QQQQQKQPRM VALKDQNKMQ  240
IRKRAPMDTE EEEADSMDSL PPPTTGKRAR RVVDKVVSSG GKGRKWGNSV RDLTQAILRF  300
GEAYEQAETA KLQQVVEMEK QRMKLAKELE LQRMQFFMKT QLEISQLKHG RRSGGIGKSS  360
DHHTKINNSN NNNDNNNISG NSN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.102490.0ovule| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153210.0JX615321.1 Gossypium hirsutum clone NBRI_GE59245 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016749629.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG81e-114ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1U8PHF70.0A0A1U8PHF7_GOSHI; trihelix transcription factor ASIL2
STRINGGorai.009G144800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.19e-53sequence-specific DNA binding transcription factors