PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1133
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 734aa    MW: 83580.8 Da    PI: 8.9982
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1133genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.5e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +++++G+g Wk I +        ++R+  ++k++w+++
      Gh_A05G1133  5 KQKWTAEEEEALLAGITKHGPGKWKNILKDPEfapflTHRSNIDLKDKWRNL 56
                     79************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.855161IPR017930Myb domain
SuperFamilySSF466891.72E-15258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-14456IPR009057Homeodomain-like
SMARTSM007172.7E-8459IPR001005SANT/Myb domain
PfamPF002495.6E-8556IPR001005SANT/Myb domain
CDDcd116604.78E-20656No hitNo description
SuperFamilySSF467851.69E-15113195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005264.2E-17114179IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.671116184IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.3E-13116182IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.9E-10118177IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF557291.21E-78346531IPR016181Acyl-CoA N-acyltransferase
PfamPF012333.9E-77371530IPR022676Myristoyl-CoA:protein N-myristoyltransferase, N-terminal
Gene3DG3DSA:3.40.630.308.3E-72398528IPR016181Acyl-CoA N-acyltransferase
PROSITE patternPS009750480488IPR022678Myristoyl-CoA:protein N-myristoyltransferase, conserved site
Gene3DG3DSA:3.40.630.301.0E-97529734IPR016181Acyl-CoA N-acyltransferase
SuperFamilySSF557292.78E-82532734IPR016181Acyl-CoA N-acyltransferase
PfamPF027999.2E-77544722IPR022677Myristoyl-CoA:protein N-myristoyltransferase, C-terminal
PROSITE patternPS009760703709IPR022678Myristoyl-CoA:protein N-myristoyltransferase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004379Molecular Functionglycylpeptide N-tetradecanoyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEALLAGI TKHGPGKWKN ILKDPEFAPF LTHRSNIDLK DKWRNLSVST  60
STQGARDKSR APKVKAIVAS LPNTPNSSAP VALRAHNVTS DTVVGDSSNN GIDGKNAPRY  120
NTMIFEALST IKDTNGCDIS AIVSYIEQRH EVPPNFRRLL SSRLRRLVSQ GKLEKVQNCY  180
KIREDTLMGT ETPTPKQKDV RLRQNSGAIG SGETVEEAAI TTAYKVAEAE NKSFLAAEAV  240
KEAERVSKMA EDTDSMLQLV KEIYEQCSRG ETVILDLEDR RSAYTLLLLF PNSQCPLTRR  300
SFKILRSPLQ FELFPGNFSK NFHLIHFYNI RKEITGKVQE SLGLEKRHKF WESQPVGQFK  360
DLGDTSLPEG PIEAPTPLSE VKQEPYNLPT MYEWITCDID SDEMCTEVYN LLANNYVEDD  420
ENMFRFNYSK EFLRWALHPP GYFKSWHIGV RVKSSKKLVA FITGVPARIR VRDEIVTMAE  480
VNFLCVHKKL RSKRLAPVMI KEVTRRVHLE NIWQAAYTAG IIIPTPITSC QYWHRSLNPK  540
KLIEVGFSRL GPRMTMSRTI KLYKLPESTV TPGFRKMGLH DVPAVTRILR NYLSQFVVAP  600
DFSEHDVKHW LLPTEGVIDS YVAESSETHE ITDFCSFYTL PSSILGNKNH LTLKAAYSYY  660
NVCTKTPLLQ LMNDALIVAK QKEFDVFNAL DVMHNDTFLK ELKFGPGDGS LHYYLYNYRI  720
RHTLKPSELG LVLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5o9s_A1e-15234573320401Glycylpeptide N-tetradecanoyltransferase 1
5o9s_B1e-15234573320401Glycylpeptide N-tetradecanoyltransferase 1
5o9t_A1e-15234573320401Glycylpeptide N-tetradecanoyltransferase 1
5o9t_B1e-15234573320401Glycylpeptide N-tetradecanoyltransferase 1
5o9u_A1e-15234573320401Glycylpeptide N-tetradecanoyltransferase 1
5o9u_B1e-15234573320401Glycylpeptide N-tetradecanoyltransferase 1
5o9v_A1e-15234573320401Glycylpeptide N-tetradecanoyltransferase 1
5o9v_B1e-15234573320401Glycylpeptide N-tetradecanoyltransferase 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.160620.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously, with higher levels in young tissues (at protein level). {ECO:0000269|PubMed:10734119}.
Functional Description ? help Back to Top
Source Description
UniProtAdds a myristoyl group to the N-terminal glycine residue of certain cellular proteins. Can also use decanoyl-CoA and lauroyl-CoA as substrates. {ECO:0000269|PubMed:10734119, ECO:0000269|PubMed:12912986}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606207.10.0PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like
RefseqXP_025815372.10.0glycylpeptide N-tetradecanoyltransferase 1
SwissprotQ9LTR90.0NMT1_ARATH; Glycylpeptide N-tetradecanoyltransferase 1
TrEMBLA0A0D2TPY90.0A0A0D2TPY9_GOSRA; Glycylpeptide N-tetradecanoyltransferase
STRINGGorai.009G142900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.15e-85MYB_related family protein
Publications ? help Back to Top
  1. Qi Q, et al.
    Molecular cloning, genomic organization, and biochemical characterization of myristoyl-CoA:protein N-myristoyltransferase from Arabidopsis thaliana.
    J. Biol. Chem., 2000. 275(13): p. 9673-83
    [PMID:10734119]
  2. Nasr F,Filipowicz W
    Characterization of the Saccharomyces cerevisiae cyclic nucleotide phosphodiesterase involved in the metabolism of ADP-ribose 1",2"-cyclic phosphate.
    Nucleic Acids Res., 2000. 28(8): p. 1676-83
    [PMID:10734185]
  3. Pierre M, et al.
    N-myristoylation regulates the SnRK1 pathway in Arabidopsis.
    Plant Cell, 2007. 19(9): p. 2804-21
    [PMID:17827350]
  4. Renna L, et al.
    Golgi traffic and integrity depend on N-myristoyl transferase-1 in Arabidopsis.
    Plant Cell, 2013. 25(5): p. 1756-73
    [PMID:23673980]
  5. Kapos P,Xu F,Meinnel T,Giglione C,Li X
    N-terminal modifications contribute to flowering time and immune response regulations.
    Plant Signal Behav, 2015. 10(10): p. e1073874
    [PMID:26361095]
  6. Chen W, et al.
    NMT1 and NMT3 N-Methyltransferase Activity Is Critical to Lipid Homeostasis, Morphogenesis, and Reproduction.
    Plant Physiol., 2018. 177(4): p. 1605-1628
    [PMID:29777000]