PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0892
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92332 Da    PI: 6.2756
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0892genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-182683457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Gh_A05G0892 26 YVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
                 5789****************************************************97 PP
2START156.91.6e-491643712204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  ++    +e+l+d++ W+++++  e+      g  g+++l +a+
  Gh_A05G0892 164 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFTISQSCSGVAARACGLVSLEPI-KIAEILKDRPSWSRDCRNLEVFTMFPAGngGTIELVYAQ 260
                  7899******************************************************.7777777777*******9999999998888********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                    a+++l+p Rdf+++Ry+ +l+ g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s+ + 
  Gh_A05G0892 261 KFAPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGSGAGPSaaaAAQFVRAEVLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVI 358
                  ***********************************99999988999**************************************************** PP

                  HHHHHHHHTXXXX CS
        START 192 gaktwvatlqrqc 204
                  ++k++ a+l++ +
  Gh_A05G0892 359 AQKMTIAALRYIR 371
                  ********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.2E-152288IPR001356Homeobox domain
SuperFamilySSF466895.56E-162386IPR009057Homeodomain-like
CDDcd000863.81E-162585No hitNo description
PfamPF000467.5E-162683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-182784IPR009057Homeodomain-like
PROSITE profilePS5007115.1272884IPR001356Homeobox domain
CDDcd146861.62E-677116No hitNo description
PROSITE profilePS5084827.691154382IPR002913START domain
CDDcd088758.87E-66158374No hitNo description
Gene3DG3DSA:3.30.530.203.8E-18163367IPR023393START-like domain
SuperFamilySSF559619.06E-32163375No hitNo description
SMARTSM002341.3E-40163373IPR002913START domain
PfamPF018526.4E-47164371IPR002913START domain
PfamPF086708.3E-50699842IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MAMALAQHRE SSSDSSINKH LDGGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQKKESSRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVC  120
ENGYMKQQLH TVNTSAADAN CDSLSTTPQH SLRDTNSPAG LLSIAEETLA EFLSKATGTA  180
VDWVQMPGMK PGPDSVGIFT ISQSCSGVAA RACGLVSLEP IKIAEILKDR PSWSRDCRNL  240
EVFTMFPAGN GGTIELVYAQ KFAPTTLAPA RDFWTLRYTT TLENGSLVVC ERSLSGSGAG  300
PSAAAAAQFV RAEVLPSGYL IRPCEGGGSI IHIVDHLNLE AWSVPEVLRP LYESSKVIAQ  360
KMTIAALRYI RQIAQETSGE VVYSLGRQPA VLRTFSQRLS RGFNDAINGF NDDGWSIMNC  420
DGTEDVIIAI NSSKSFSSTS NPANALSFLG GVLCAKASML LQNIAPAVLV RFLREHRSEW  480
ADFNVDAYCA ASLKAGTNAY PGMRPTRFTG SQIIMPLGHT IEHEELLEVI RLEGHSFVQE  540
DAFVSRDIHL LQICSGIDEN AVGACSELVF APIDEMFPDD GPLLPSGFRV IPLDSKSSDT  600
QDSLTTNRTL DLTSSLEVGP ATNHAAGDTS SCRNTRSVLT IAFQFPFESN LRDNVATMAR  660
QYVRSVISSV QRVAMAISPS GLNPAVGSKL SPGSPETLTL AHWICRSYSY HLGAELLRSE  720
SLGGDSILKN LWQHQDAILC CSLKSQPVFI FANQAGLDML ETTLVALQDI TLDKLFDESG  780
RKALCSDFGK LMQQGYACLP AGICISTMGR HVSYEQAFAW KVLEADESTV HCLAFSFVNW  840
SFV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.194330.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at the earliest stages and throughout LSM initiation and development. In embryo development, expressed at the heart stage until the 'walking stick' stage in the adaxial portion of the cotyledon primordia, the shoot apical meristem (SAM) and the vascular precursor cells of the hypocotyl and root. In developing flowers, expressed first at stage 1 in the center of L3 layer and then expands to the center of L2 and L1 layers. Expressed in the center of flower meristem through stages 4 and 5. At stage 6, expressed in the adaxial side of the carpel primordia and then on the adaxial carpel face. {ECO:0000269|PubMed:11169198}.
UniprotTISSUE SPECIFICITY: Expressed in the interfascicular regions of stem and vascular bundles of young roots and leaves. {ECO:0000269|PubMed:10559440}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017603001.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A1U8PJI40.0A0A1U8PJI4_GOSHI; homeobox-leucine zipper protein REVOLUTA-like
STRINGGorai.009G107500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]