PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0803
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 699aa    MW: 77484.2 Da    PI: 8.7929
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0803genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.8e-07583633148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++l
      Gh_A05G0803 583 RRPFSIAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTLL 633
                      567888899*****************9988889**************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.44E-6390481IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.922578637IPR017930Myb domain
SMARTSM007174.1E-6582635IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-10583634IPR009057Homeodomain-like
SuperFamilySSF466895.13E-16584665IPR009057Homeodomain-like
CDDcd116602.04E-17584634No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPAIP RATRSARKRV PFRKRVEGNQ TSAFDLLATV AGTLLLDKES  60
SPASNNSWNA EDQSAVEKNN VKEERQDGDQ SLKLETCNVS ELVPQTNDPN YSSRESRSLQ  120
NGNQFGVTSA LTTSECFERL DSQKLINGKI KNEMGSLACK LETGPFVSRT PGDCVEPVSE  180
NKVLTDEELD RTNKASSGEV ADKCPLEDPL VLDGKPPAVV SSDSSIKAPS FGEHDPFISF  240
PVQQYDVNVV SRDDDEKSSG CTHPSPIREP FRSTPRIGDR RIRKILASRY WKVALRSKNA  300
TYSNYDENLK SGYCNRSTYK RLRSGRNFPF KKRKFLHYTS ESNSDGGTIS EGISDLPEKN  360
INGKASILYS KMHGVTGESS SLADQRKSFN SRDPHVKLRI KSFRVPELFI EIPESATVGS  420
LKRTVKEAVT AILGGGLCVG VLLQGKKVRD DNKTLLQTGI SRDNQMDALG FSLEPNPSHA  480
SPSLCPGGSP LTLPHDIPLP LARYPANPRL VNQVTCHPST EPCIPNAGNF IESNNDCTAD  540
MFDKSTTESK ALVAVPAMSV ETLAAVPVHK KSKQSEVAQR RIRRPFSIAE VEALVQAVEK  600
LGTGRWRDVK LRAFDNAKHR TYVDLKDKWK TLLHTARISP QQRRGEPVPQ ELLDRVLNAH  660
TYWSQQQAKQ QQLPESCLPH YNSTMIGSGR CDDDENILG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A9e-575676781112Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.164380.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9643742e-49JX964374.1 Gossypium hirsutum clone NBRI_TRANS-643 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016750591.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_016750592.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_016750593.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_016750594.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_016750595.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
TrEMBLA0A1U8PH990.0A0A1U8PH99_GOSHI; telomere repeat-binding protein 5-like isoform X1
STRINGGorai.009G098300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-147TRF-like 2