PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0639
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 723aa    MW: 79105.7 Da    PI: 7.2244
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0639genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-094274641954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Gh_A05G0639 427 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 464
                  554458******************************88 PP
2BELL121.14.8e-39290361172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +rqelq+kkakL+++l+eV++rY+qy++q+q+v++sFe++aglg+ak+Yt+lAl++iS++FrcLkdai+ qi
  Gh_A05G0639 290 QRQELQMKKAKLVNMLDEVEQRYRQYHHQMQMVVASFEQAAGLGAAKSYTALALQTISKQFRCLKDAISCQI 361
                  69*******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.0E-64216359IPR006563POX domain
PfamPF075262.5E-50221358IPR006563POX domain
PROSITE profilePS5007111.774405468IPR001356Homeobox domain
SMARTSM003896.1E-9408472IPR001356Homeobox domain
CDDcd000862.84E-12408469No hitNo description
SuperFamilySSF466896.42E-17409475IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28411475IPR009057Homeodomain-like
PfamPF059203.0E-18425464IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MATYIHGSSE FQAAPAASDG MQTLYLMNPN YVPYSDTHQP ATATNMFFLN PAGNSLNPIS  60
LPHAPPSNYN HFLGLPLPSP TPSIGPSDSD EPNRPPPLVS GVHHNLWGSS IDQQNSSPGS  120
SSHPQLVSAV ARAGNSGGPL DVISQLGLRW SGVSSRQGLS LSLSSLQVPY RSSNVETVIQ  180
GQPEVAVPPT TSLAADDMRI SGSSPSTVSV VSNGISGVQS VVLGSKYLRA VQELLDEVVK  240
VGKGKKTHPS GGTKEKTKAA KTEPVAAVNG DGSSAGENGV EPGPELTTAQ RQELQMKKAK  300
LVNMLDEVEQ RYRQYHHQMQ MVVASFEQAA GLGAAKSYTA LALQTISKQF RCLKDAISCQ  360
IKATNKSLGE EDCLGVKMEG SRLRYVDNQI RQQRALQQLG MIQHHNAWRP QRGLPERAVC  420
VLRAWLFEHF LHPYPKDSDK HMLAKQTGLT RSQVSNWFIN ARVRLWKPMV EEMYMEEIKE  480
QERNTNGSEE INADKNEQQM EPGSYSGGQT MDQVKAQSKP SAISQNNNNN ITFHADQFSN  540
STISTSPMGG SLVQQTSFNL IGSSDLDRSP KKPRNKLQNP AFGILPMEME MEMKQGETRE  600
INMRFGDERL FKDHSYSYLS GTVYSSMREV GRFNHGQQLP PGFPGNSGVS LTLGLPHCEN  660
LSLSGNHQNF VPNQNINDVE GATQSDFCAI NTQPQPSHST TYDTMEMQSR KRFAAPLLPD  720
FVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16414472563Homeobox protein Meis2
3k2a_B5e-16414472563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016750714.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_016750716.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_017605276.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_017605277.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_017605278.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLA0A2P5X7A20.0A0A2P5X7A2_GOSBA; Uncharacterized protein
STRINGGorai.009G082700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16274513
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-118BEL1-like homeodomain 1