PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G0484 | ||||||||
Common Name | WRKY70 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 252aa MW: 28153.1 Da PI: 9.1077 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91 | 9.2e-29 | 82 | 141 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ k+++ pr+Y++C +a gCpvkkkv+r+ ed+++v+ tYeg+Hnh+ Gh_A05G0484 82 VKDGFQWRKYGQKVTKDNPSPRAYFKCFMApGCPVKKKVQRCVEDKSIVVATYEGQHNHD 141 58**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-29 | 76 | 141 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.682 | 77 | 143 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-25 | 79 | 142 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.0E-32 | 82 | 142 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.3E-24 | 83 | 141 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MSPDYDKEKV EVLEAELECL QKENEALGLM FETMSRKYIM LHQAYLRQKS NKRQRLEVPA 60 AAGSKASQVF VKTDPRDQSL IVKDGFQWRK YGQKVTKDNP SPRAYFKCFM APGCPVKKKV 120 QRCVEDKSIV VATYEGQHNH DVDSTAAGKS MLASCSSAIF SGTRSIPFPP LDNPFPPPIT 180 LDLTLSGSDL QNHRNLPSFM HDYSTSNDDG NNKKKKIEDY VASLTKDPNF TLALAAAVAR 240 SIKTEHPKPS PP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-21 | 60 | 142 | 1 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 3e-21 | 60 | 142 | 1 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.6674 | 0.0 | leaf |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669834 | 0.0 | KF669834.1 Gossypium hirsutum WRKY transcription factor 70 (WRKY70) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017630221.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
TrEMBL | A0A1U8PGT1 | 0.0 | A0A1U8PGT1_GOSHI; probable WRKY transcription factor 40 | ||||
STRING | Gorai.009G062400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15610 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 4e-44 | WRKY DNA-binding protein 40 |
Publications ? help Back to Top | |||
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