PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0483
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 313aa    MW: 34180.4 Da    PI: 8.4595
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0483genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.5e-30155213259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rsaedp++++ tYegeHnhe
  Gh_A05G0483 155 RDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSAEDPSILVATYEGEHNHE 213
                  7***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-29148214IPR003657WRKY domain
PROSITE profilePS5081125.97149215IPR003657WRKY domain
SuperFamilySSF1182902.62E-25151214IPR003657WRKY domain
SMARTSM007746.2E-35154214IPR003657WRKY domain
PfamPF031061.1E-24156213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MESAWVDTTL DLNINPSHNT IKVLKRESSG KLADSDVKVP VKQETGALVE ELNRIIAENK  60
KLTEMLTVLC ERYSSLQNQY MELVSRNSGS DATAATSKKR KAECEDYATM IGFSGKAESS  120
CSDEDSCKKP KDCIKAKISR AYVRTNPSDN SLIVRDGYQW RKYGQKVTRD NPSPRAYFKC  180
SFAPSCPVKK KVQRSAEDPS ILVATYEGEH NHEQHSPPAL SSLSPNSGTS NPRSAPVSSS  240
SSAPAKSSPP TVTLELMKPT GLGNDTQNPT QQVDEPAIQQ ILVQQMAASL TRDPNFTAAL  300
ASAISGKVLD HKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-211532131675Probable WRKY transcription factor 4
2lex_A6e-211532131675Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.91920.0boll| ovule| root| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8647580.0DQ864758.1 Gossypium hirsutum WRKY transcription factor 2 (WRKY) mRNA, complete cds.
GenBankKF6698570.0KF669857.1 Gossypium hirsutum WRKY transcription factor 71 (WRKY71) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016750423.10.0PREDICTED: probable WRKY transcription factor 40 isoform X1
TrEMBLA0A1U8PJE30.0A0A1U8PJE3_GOSHI; probable WRKY transcription factor 40 isoform X1
STRINGGorai.009G062300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24772872
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.15e-80WRKY DNA-binding protein 40