PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A04G1017

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 195aa MW: 22543 Da PI: 10.358

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A04G1017	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.7	1.3e-17	17	62	1	46
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 k ienk + v fskRr gi KK +ELS+LC++e++ i+fs+tgk Gh_A04G1017 17 KMIENKEDQLVVFSKRRLGIYKKISELSILCGTEILFIVFSPTGKP 62 68******************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.385	9	69	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.4E-23	9	68	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.54E-22	10	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.6E-16	11	31	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.3E-20	19	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.6E-16	31	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.6E-16	46	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MASTGKKTRG RKKTQMKMIE NKEDQLVVFS KRRLGIYKKI SELSILCGTE ILFIVFSPTG 60 KPFSFGCPSI ESVSNHFLSR NRPINDNTNI LIEAYRMVRT NKLVQHYNEV HSQIDAIKRK 120 KKVLVSTQQT SGTNNTNHWW KTPIHQCNLR ELDELYSRFS ELAHLCHIAW CKKIVDTSSM 180 SASTYFGNGH HRQEL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1hbx_A	4e-13	2	78	3	83	SERUM RESPONSE FACTOR
1hbx_B	4e-13	2	78	3	83	SERUM RESPONSE FACTOR
1hbx_D	4e-13	2	78	3	83	SERUM RESPONSE FACTOR
1hbx_E	4e-13	2	78	3	83	SERUM RESPONSE FACTOR
1k6o_B	6e-13	2	78	2	82	Serum response factor
1k6o_C	6e-13	2	78	2	82	Serum response factor
1srs_A	4e-13	2	78	3	83	PROTEIN (SERUM RESPONSE FACTOR (SRF))
1srs_B	4e-13	2	78	3	83	PROTEIN (SERUM RESPONSE FACTOR (SRF))
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016673103.1	3e-71	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A2P5X859	1e-130	A0A2P5X859_GOSBA; Uncharacterized protein
STRING	Gorai.012G148000.1	1e-121	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	1e-24	AGAMOUS-like 57